ModCRE DB

Transcription factor

Q32LY2 - HAND2

Heart- and neural crest derivatives-expressed protein 2 (Deciduum, heart, autonomic nervous system and neural crest derivatives-expressed protein 2)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 134 aa

20 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA1638.1 NN 70+% JASPAR ACCAGATGGC 91.3% identity Open · Scan
MA0092.1 NN 70+% JASPAR GGTCTGGCAT 73.2% identity Open · Scan
Nearest Neighbor (70% - 40%)18
MotifPredictionSourceDNA bindingSupportLogoActions
MA0607.1 NN 70-40% JASPAR CCATATGT 57.1% identity Open · Scan
MA1472.1 NN 70-40% JASPAR AACAGCTGTT 57.1% identity Open · Scan
M01718_2.00 NN 70-40% CisBP AACATATGGT 56.0% identity Open · Scan
MA0633.1 NN 70-40% JASPAR ACCATATGTT 56.0% identity Open · Scan
MA1123.1 NN 70-40% JASPAR ATTCCAGATGTTT 56.0% identity Open · Scan
M00756_2.00 NN 70-40% CisBP CGCAGCTGTG 55.5% identity Open · Scan
MA0048.1 NN 70-40% JASPAR GCGCAGCTGCGT 55.5% identity Open · Scan
MA1529.1 NN 70-40% JASPAR GGGCCGCAGCTGCGTCCC 55.5% identity Open · Scan
M05976_2.00 NN 70-40% CisBP ACCATATGGCG 55.2% identity Open · Scan
MA0665.1 NN 70-40% JASPAR AACAGCTGTT 54.1% identity Open · Scan
MA0832.1 NN 70-40% JASPAR GCAACAGCTGTTGT 54.1% identity Open · Scan
MA1568.1 NN 70-40% JASPAR CACCATATGGCG 54.1% identity Open · Scan
M03606_2.00 NN 70-40% CisBP CCACACGACGCA 54.0% identity Open · Scan
M04156_2.00 NN 70-40% CisBP AACAGCTGACGC 53.0% identity Open · Scan
MA1618.1 NN 70-40% JASPAR AAACAGATGTTTA 53.0% identity Open · Scan
MA0091.1 NN 70-40% JASPAR CGACCATCTGTT 51.9% identity Open · Scan
MA0140.1 NN 70-40% JASPAR CTGGTGGGGACAGATAAG 51.9% identity Open · Scan
M06000_2.00 NN 70-40% CisBP CCAGATGGCACGGACACAACA 51.1% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 134 aa
27-65

Region 27-65 0 PWM

Residues
39 aa
Domains
PF00010 · Helix-loop-helix DNA-binding domain
3D models
1 active PDB
Templates
5I50
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 27-651 model
Actions
Predicted = Low DIMER_Q32LY2:27:65_5i50_B_1 5i50 27-65 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
27-68PF00010Helix-loop-helix DNA-binding domainoverlaps 27-65