ModCRE DB

Transcription factor

Q3KNR4 - PAX4

PAX4 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 341 aa

63 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M00349_2.00 NN 70+% CisBP CTAATTAGC 99.7% identity Open · Scan
MA0068.2 NN 70+% JASPAR CTAATTAG 98.4% identity Open · Scan
MA0068.1 NN 70+% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 82.8% identity Open · Scan
Nearest Neighbor (70% - 40%)60
MotifPredictionSourceDNA bindingSupportLogoActions
M02425_2.00 NN 70-40% CisBP CAGTCAAGCG 62.1% identity Open · Scan
M02690_2.00 NN 70-40% CisBP AGTCACGC 62.1% identity Open · Scan
M03294_2.00 NN 70-40% CisBP CGTCACGCTTGACTGCTC 62.1% identity Open · Scan
MA0067.1 NN 70-40% JASPAR AGTCACGC 62.1% identity Open · Scan
M09622_2.00 NN 70-40% CisBP GCAGCCAAGCGTGACC 60.9% identity Open · Scan
MA0014.1 NN 70-40% JASPAR AGAGCACTGAAGCGTAACCG 60.9% identity Open · Scan
MA0014.2 NN 70-40% JASPAR GAGGGCAGCCAAGCGTGAC 60.9% identity Open · Scan
M00402_2.00 NN 70-40% CisBP TAATTAG 59.3% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 59.3% identity Open · Scan
MA0634.1 NN 70-40% JASPAR TCTAATTAAA 59.3% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 59.3% identity Open · Scan
M00424_2.00 NN 70-40% CisBP ACTAATTA 58.9% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 57.6% identity Open · Scan
M03945_2.00 NN 70-40% CisBP GTCATGCGTGACG 57.3% identity Open · Scan
MA0779.1 NN 70-40% JASPAR CGTCACGCATGACTGCA 56.0% identity Open · Scan
MA0781.1 NN 70-40% JASPAR CGTCACGCATGACTGCA 56.0% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 55.9% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 55.9% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 55.9% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 55.9% identity Open · Scan
M03278_2.00 NN 70-40% CisBP TTAATTTAATTAT 55.5% identity Open · Scan
M04917_2.00 NN 70-40% CisBP GTAATTAG 55.5% identity Open · Scan
MA0853.1 NN 70-40% JASPAR CGCATTAATTAATTACC 55.5% identity Open · Scan
M03947_2.00 NN 70-40% CisBP AGCGTGACGGTTCCGCT 54.8% identity Open · Scan
M03121_2.00 NN 70-40% CisBP TTAATTGG 54.2% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 54.2% identity Open · Scan
M10741_2.00 NN 70-40% CisBP AACTAATTACCATTATCG 54.2% identity Open · Scan
MA0075.1 NN 70-40% JASPAR AATTA 54.2% identity Open · Scan
MA0075.3 NN 70-40% JASPAR CTAATTAA 54.2% identity Open · Scan
MA0716.1 NN 70-40% JASPAR CTAATTAA 54.2% identity Open · Scan
MA0854.1 NN 70-40% JASPAR CGAATTAATTAATCACC 54.2% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 53.3% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 53.3% identity Open · Scan
M06322_2.00 NN 70-40% CisBP TTAATTA 53.3% identity Open · Scan
M02426_2.00 NN 70-40% CisBP ACCGTGACCAC 53.1% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 52.5% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 52.5% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 52.5% identity Open · Scan
MA0682.1 NN 70-40% JASPAR TTAATCCC 52.5% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 52.5% identity Open · Scan
MA0714.1 NN 70-40% JASPAR CTTAATCCC 52.5% identity Open · Scan
MA1481.1 NN 70-40% JASPAR CTAATTAC 52.5% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 52.5% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 52.0% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 51.7% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 51.7% identity Open · Scan
M03851_2.00 NN 70-40% CisBP CTAATTGA 51.7% identity Open · Scan
M04941_2.00 NN 70-40% CisBP CTAATTAC 51.1% identity Open · Scan
M02210_2.00 NN 70-40% CisBP AAGTACTTAA 50.9% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 50.8% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 50.8% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 50.8% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 50.8% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 50.8% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 50.8% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 50.8% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 50.7% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 50.6% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 50.6% identity Open · Scan
M05685_2.00 NN 70-40% CisBP GGCGCAGTCATGCGTGACGG 50.4% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 341 aa
162-214

Region 162-214 0 PWM

Residues
53 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
6A8R
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 162-2141 model
Actions
Predicted = Low DIMER_Q3KNR4:162:214_6a8r_B_1 6a8r 162-214 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
26-119PF00292'Paired box' domainNo overlap with loaded model regions
162-217PF00046Homeodomainoverlaps 162-214