ModCRE DB

Transcription factor

Q3LIC1 - Nbla00121

Uncharacterized protein Nbla00121

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 307 aa

93 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)87
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 59.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 59.2% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 57.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.2% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 56.5% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 56.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 55.7% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.7% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 54.7% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 54.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.2% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 54.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.1% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 54.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 53.5% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 53.0% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 53.0% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 53.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.0% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 52.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 52.7% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 52.6% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 52.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 52.6% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 52.6% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 52.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 52.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 52.6% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 52.4% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 52.3% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 52.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.2% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 52.0% identity Open · Scan
MA0741.1 NN 70-40% JASPAR GCCACGCCCCC 51.9% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 51.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 51.7% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 51.7% identity Open · Scan
MA0516.1 NN 70-40% JASPAR GCCCCGCCCCCTCCC 51.7% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 51.6% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 51.6% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 51.4% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 51.3% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 51.3% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 51.3% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 51.1% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 51.0% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.8% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.6% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 50.5% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 50.5% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.5% identity Open · Scan
M04615_2.00 NN 70-40% CisBP CTCGATCGAAGGGCACAGTCATT 50.3% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.2% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 50.1% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 50.1% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 50.1% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 50.0% identity Open · Scan
M06169_2.00 NN 70-40% CisBP GCCACGCCCAAC 50.0% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.0% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.0% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.0% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 50.0% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 50.0% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 50.0% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q3LIC1_Q3LIC1_HUMAN:120:168_1llm_D_1 ModCRE Homology model TACGGGCCCGGA Region 120-168 · 1 3D model Open · Scan
TFS_tr_Q3LIC1_Q3LIC1_HUMAN:103:256_2i13_A_1 ModCRE Homology model TTCACACTTAAGTGTTACTTT Region 103-256 · 1 3D model Open · Scan
TFS_tr_Q3LIC1_Q3LIC1_HUMAN:1:280_7w1m_H_1 ModCRE Homology model GTTCTGGGGTCGGGCCCCGCGGATACGCCTTCCGCCCATG Region 1-280 · 1 3D model Open · Scan
TFS_tr_Q3LIC1_Q3LIC1_HUMAN:37:304_5v3j_E_1 ModCRE Homology model CTCCTGTCACCGGGGGTTGGGGCCA Region 37-304 · 1 3D model Open · Scan
TFS_tr_Q3LIC1_Q3LIC1_HUMAN:37:304_5v3m_C_1 ModCRE Homology model GGGCCCACGCCCCCCCCCCCCCCCCA Region 37-304 · 1 3D model Open · Scan
TFS_tr_Q3LIC1_Q3LIC1_HUMAN:7:285_5wjq_D_1 ModCRE Homology model CGCGCAAGCCGCCCCCCCGCCCCCCCCC Region 7-285 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 307 aa
1-304

Region 1-304 6 PWM

Residues
304 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 1-3046 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q3LIC1_Q3LIC1_HUMAN:120:168_1llm_D_1 1llm 120-168 View model · PDB
Predicted = Low TFS_tr_Q3LIC1_Q3LIC1_HUMAN:103:256_2i13_A_1 2i13 103-256 View model · PDB
Predicted = Low TFS_tr_Q3LIC1_Q3LIC1_HUMAN:1:280_7w1m_H_1 7w1m 1-280 View model · PDB
Predicted = Low TFS_tr_Q3LIC1_Q3LIC1_HUMAN:37:304_5v3j_E_1 5v3j 37-304 View model · PDB
Predicted = Low TFS_tr_Q3LIC1_Q3LIC1_HUMAN:37:304_5v3m_C_1 5v3m 37-304 View model · PDB
Predicted = Low TFS_tr_Q3LIC1_Q3LIC1_HUMAN:7:285_5wjq_D_1 5wjq 7-285 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 1:304 120,120 168,168 P:C,D · DNA:A,B 51.0% / 67.3% 56,57 View · PDB DIMER_tr_Q3LIC1_Q3LIC1_HUMAN:120:168_1llm_D_1
4 2i13 1:304 103 256 P:A · DNA:C,D 50.6% / 70.1% 100 View · PDB TFS_tr_Q3LIC1_Q3LIC1_HUMAN:103:256_2i13_A_1
1 5v3m 1:304 37 304 P:C · DNA:A,B 48.1% / 68.1% 96 View · PDB TFS_tr_Q3LIC1_Q3LIC1_HUMAN:37:304_5v3m_C_1
2 5v3j 1:304 37 304 P:E · DNA:A,B 48.1% / 68.1% 96 View · PDB TFS_tr_Q3LIC1_Q3LIC1_HUMAN:37:304_5v3j_E_1
3 5wjq 1:304 7 285 P:D · DNA:A,B 45.2% / 64.9% 99 View · PDB TFS_tr_Q3LIC1_Q3LIC1_HUMAN:7:285_5wjq_D_1
5 7w1m 1:304 1 280 P:H · DNA:F,G 33.9% / 49.5% 86 View · PDB TFS_tr_Q3LIC1_Q3LIC1_HUMAN:1:280_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
10-32PF00096Zinc finger, C2H2 typeoverlaps 1-304
66-88PF00096Zinc finger, C2H2 typeoverlaps 1-304
94-116PF00096Zinc finger, C2H2 typeoverlaps 1-304
136-160PF13465Zinc-finger double domainoverlaps 1-304
206-228PF00096Zinc finger, C2H2 typeoverlaps 1-304
234-256PF00096Zinc finger, C2H2 typeoverlaps 1-304
262-284PF00096Zinc finger, C2H2 typeoverlaps 1-304