ModCRE DB

Transcription factor

Q3MI94 - ZNF578

ZNF578 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 394 aa

104 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M07701_2.00 NN 70+% CisBP CCTGGGCTAGGCCCTGGC 84.2% identity Open · Scan
M00944_2.00 NN 70+% CisBP TCGCTATAA 72.6% identity Open · Scan
M00953_2.00 NN 70+% CisBP ATCTATAT 71.4% identity Open · Scan
M07747_2.00 NN 70+% CisBP TGGTCTATAAAGGGCCTGGTT 70.6% identity Open · Scan
Nearest Neighbor (70% - 40%)100
MotifPredictionSourceDNA bindingSupportLogoActions
M00958_2.00 NN 70-40% CisBP CGGCATCCC 69.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 67.0% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 66.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M07759_2.00 NN 70-40% CisBP GGAGCGCCCCTGCCCGGC 65.7% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 65.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 64.7% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 61.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 60.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.6% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 59.5% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 58.5% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 58.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 58.3% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 57.8% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 57.7% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 57.6% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 57.5% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 57.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 57.4% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 57.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 57.2% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 57.0% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 56.8% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 56.5% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 56.5% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 56.3% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 56.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 55.7% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 55.5% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 55.4% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.1% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 55.0% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 54.9% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 54.9% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 54.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 54.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.2% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 53.9% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 53.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.8% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 53.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 53.5% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.3% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 53.1% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 53.1% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 53.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.9% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 52.9% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 52.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.8% identity Open · Scan
M08914_2.00 NN 70-40% CisBP ATTTAGTCCATTTACATTTAATGT 52.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 52.6% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.6% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 52.6% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 52.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 52.5% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 52.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 52.2% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 52.2% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 52.0% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 51.9% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 51.8% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 51.6% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 51.5% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 51.5% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.5% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 51.4% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.4% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 51.4% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 51.4% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.3% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 51.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.1% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M01457_2.00 NN 70-40% CisBP GCGCACGGAC 50.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 50.8% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 50.7% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 50.7% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.6% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.6% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.6% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 50.6% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 50.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 50.5% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 50.2% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.1% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.1% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.1% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 394 aa
116-226

Region 116-226 0 PWM

Residues
111 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5EGB
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 116-2261 model
Actions
Predicted = Low TFS_Q3MI94:116:226_5egb_A_1 5egb 116-226 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
91-113PF13912C2H2-type zinc fingerNo overlap with loaded model regions
147-169PF00096Zinc finger, C2H2 typeoverlaps 116-226
175-197PF00096Zinc finger, C2H2 typeoverlaps 116-226
203-225PF00096Zinc finger, C2H2 typeoverlaps 116-226
231-253PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
259-281PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
315-337PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions