ModCRE DB

Transcription factor

Q3SB16

Retinoic acid receptor beta (Nuclear receptor subfamily 1 group B member 2)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 184 aa

91 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)10
MotifPredictionSourceDNA bindingSupportLogoActions
M05563_2.00 NN 70+% CisBP AAAAGGTCAA 98.8% identity Open · Scan
MA1552.1 NN 70+% JASPAR AAGGTCATGACCTT 98.8% identity Open · Scan
MA0857.1 NN 70+% JASPAR AAAGGTCAAAAGGTCA 98.2% identity Open · Scan
M03424_2.00 NN 70+% CisBP AAAGGTCACCAGAGGTCA 97.7% identity Open · Scan
MA0859.1 NN 70+% JASPAR AAGGTCAAAAGGTCAA 83.4% identity Open · Scan
MA1553.1 NN 70+% JASPAR AAGGTCATGACCTT 83.4% identity Open · Scan
MA0159.1 NN 70+% JASPAR AGGTCACGGAGAGGTCA 82.7% identity Open · Scan
M03432_2.00 NN 70+% CisBP AAAGGTCAAGAGAGGTCA 82.1% identity Open · Scan
M03392_2.00 NN 70+% CisBP AAGGTCAACTAAAGGTCA 81.1% identity Open · Scan
M09277_2.00 NN 70+% CisBP GGGGGATCAAGAGGTCAAGG 79.1% identity Open · Scan
Nearest Neighbor (70% - 40%)81
MotifPredictionSourceDNA bindingSupportLogoActions
M02388_2.00 NN 70-40% CisBP GAGGTCA 64.3% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 64.3% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 63.3% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 63.3% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 62.5% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 62.5% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 62.5% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 62.5% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 61.9% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 61.6% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 61.6% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 61.6% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 61.1% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 60.5% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 60.2% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 60.0% identity Open · Scan
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 60.0% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 59.7% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 59.5% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 59.5% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 59.4% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 59.4% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 59.4% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 59.4% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 59.3% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 59.1% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 59.1% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 59.1% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 59.1% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 59.0% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 58.9% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 58.9% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 58.9% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 58.6% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 58.5% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 58.5% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 58.3% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 58.3% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 58.0% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 58.0% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 57.8% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 57.3% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 57.3% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 57.3% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 57.3% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 57.3% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 57.3% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 56.4% identity Open · Scan
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 56.0% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 56.0% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 56.0% identity Open · Scan
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 56.0% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 56.0% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 55.7% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 55.4% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 55.1% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 54.6% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 54.6% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 54.6% identity Open · Scan
MA0114.1 NN 70-40% JASPAR AGGCCAAAGGTCA 54.5% identity Open · Scan
MA0114.3 NN 70-40% JASPAR GGGGTCAAAGTCCAAT 54.5% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 54.5% identity Open · Scan
M02400_2.00 NN 70-40% CisBP GGGGTCAC 53.8% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 53.8% identity Open · Scan
MA0494.1 NN 70-40% JASPAR TGACCTAAAGTAACCTCTG 53.5% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 53.2% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 52.7% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 52.6% identity Open · Scan
M00814_2.00 NN 70-40% CisBP AAAGTCAAAT 52.5% identity Open · Scan
MA0676.1 NN 70-40% JASPAR AAAAGTCAA 52.5% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 52.2% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 52.2% identity Open · Scan
M09283_2.00 NN 70-40% CisBP TGAGGTCAAAAAAGTTCAG 52.0% identity Open · Scan
MA1533.1 NN 70-40% JASPAR ATGAACTCGATGAACTC 52.0% identity Open · Scan
M00689_2.00 NN 70-40% CisBP AAAGATCAA 51.8% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 51.3% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 51.2% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 50.9% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 50.6% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 50.0% identity Open · Scan
MA0164.1 NN 70-40% JASPAR CAAGCTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 184 aa
37-111

Region 37-111 0 PWM

Residues
75 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1DSZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 37-1111 model
Actions
Predicted = Low DIMER_Q3SB16:37:111_1dsz_A_1 1dsz 37-111 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
37-105PF00105Double treble clef zinc finger, C4 typeoverlaps 37-111