ModCRE DB

Transcription factor

Q3SY65 - LHX6

LIM homeobox 6

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 362 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0658.1 NN 70+% JASPAR ACTAATTAGC 99.7% identity Open · Scan
M09187_2.00 NN 70+% CisBP GCTGATTAC 98.4% identity Open · Scan
M00539_2.00 NN 70+% CisBP GCTGATTAC 95.7% identity Open · Scan
Nearest Neighbor (70% - 40%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M05213_2.00 NN 70-40% CisBP CTAACGAG 64.9% identity Open · Scan
MA0705.1 NN 70-40% JASPAR CTAATTAG 64.6% identity Open · Scan
M02105_2.00 NN 70-40% CisBP TTAATTAG 50.8% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 362 aa
218-275

Region 218-275 0 PWM

Residues
58 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5HOD
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 218-2751 model
Actions
Predicted = Low DIMER_Q3SY65:218:275_5hod_A_1 5hod 218-275 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
70-127PF00412LIM domainNo overlap with loaded model regions
131-185PF00412LIM domainNo overlap with loaded model regions
219-275PF00046Homeodomainoverlaps 218-275