ModCRE DB

Transcription factor

Q499Z4 - ZNF672

Zinc finger protein 672

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 452 aa

48 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)38
MotifPredictionSourceDNA bindingSupportLogoActions
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 62.3% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 58.8% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 57.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 55.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 54.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.2% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 54.1% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 54.1% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.9% identity Open · Scan
M01457_2.00 NN 70-40% CisBP GCGCACGGAC 53.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.5% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 52.7% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.7% identity Open · Scan
M06039_2.00 NN 70-40% CisBP TATCTGAAA 52.7% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.5% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 52.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 51.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 51.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.2% identity Open · Scan
M00031_2.00 NN 70-40% CisBP TACCCCGCAC 50.9% identity Open · Scan
MA0599.1 NN 70-40% JASPAR GCCCCGCCCC 50.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.4% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.3% identity Open · Scan
M01537_2.00 NN 70-40% CisBP TACCCCGCAC 50.0% identity Open · Scan
MA0753.1 NN 70-40% JASPAR CCCCCCCCAC 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q499Z4_ZN672_HUMAN:127:418_5v3j_E_1 ModCRE Homology model CCCCTGGGGGCGCTTGTGCCCGTCCC Region 127-418 · 1 3D model Open · Scan
TFS_sp_Q499Z4_ZN672_HUMAN:127:418_5v3m_C_1 ModCRE Homology model CCGACCCCGGGCGCCCCCCCCCGGGT Region 127-418 · 1 3D model Open · Scan
TFS_sp_Q499Z4_ZN672_HUMAN:12:119_5egb_A_1 ModCRE Homology model TTGGGTTGGGGGCCCCGG Region 12-119 · 1 3D model Open · Scan
TFS_sp_Q499Z4_ZN672_HUMAN:12:119_5ei9_E_1 ModCRE Homology model CCGGGCCGGGGGGGCCC Region 12-119 · 1 3D model Open · Scan
TFS_sp_Q499Z4_ZN672_HUMAN:12:92_1a1f_A_1 ModCRE Homology model ACCCGGGCGG Region 12-92 · 1 3D model Open · Scan
TFS_sp_Q499Z4_ZN672_HUMAN:12:92_1a1g_A_1 ModCRE Homology model GCCCTCGGGT Region 12-92 · 1 3D model Open · Scan
TFS_sp_Q499Z4_ZN672_HUMAN:13:119_5eh2_F_1 ModCRE Homology model TTGGGCTGGGGGCCACGGG Region 13-119 · 1 3D model Open · Scan
TFS_sp_Q499Z4_ZN672_HUMAN:162:418_5wjq_D_1 ModCRE Homology model GGGCCCCCGGGCCCCCCCCCGCCCCAT Region 162-418 · 1 3D model Open · Scan
TFS_sp_Q499Z4_ZN672_HUMAN:208:361_2i13_A_1 ModCRE Homology model CTTCAAGCACCAATAGATAAT Region 208-361 · 1 3D model Open · Scan
TFS_sp_Q499Z4_ZN672_HUMAN:224:334_5ei9_E_1 ModCRE Homology model GGGCCCCCCCCCCACCC Region 224-334 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 452 aa
12-119
127-418

Region 12-119 5 PWM

Residues
108 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
5 active PDBs
Templates
1A1F, 1A1G, 5EGB, 5EH2, 5EI9
Sources
Predicted = Low
Scan this region Show models

Region 127-418 5 PWM

Residues
292 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13894 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 12-1195 models
Actions
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:12:119_5egb_A_1 5egb 12-119 View model · PDB
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:12:119_5ei9_E_1 5ei9 12-119 View model · PDB
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:12:92_1a1f_A_1 1a1f 12-92 View model · PDB
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:12:92_1a1g_A_1 1a1g 12-92 View model · PDB
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:13:119_5eh2_F_1 5eh2 13-119 View model · PDB
Region 127-4186 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q499Z4_ZN672_HUMAN:225:274_1llm_D_1 1llm 225-274 View model · PDB
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:127:418_5v3j_E_1 5v3j 127-418 View model · PDB
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:127:418_5v3m_C_1 5v3m 127-418 View model · PDB
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:162:418_5wjq_D_1 5wjq 162-418 View model · PDB
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:208:361_2i13_A_1 2i13 208-361 View model · PDB
Predicted = Low TFS_sp_Q499Z4_ZN672_HUMAN:224:334_5ei9_E_1 5ei9 224-334 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 127:433 224 334 P:E · DNA:A,B 60.4% / 77.5% 100 View · PDB TFS_sp_Q499Z4_ZN672_HUMAN:224:334_5ei9_E_1
4 2i13 127:433 208 361 P:A · DNA:C,D 56.5% / 69.5% 100 View · PDB TFS_sp_Q499Z4_ZN672_HUMAN:208:361_2i13_A_1
1 1llm 127:433 225,225 274,274 P:C,D · DNA:A,B 54.0% / 62.0% 57,58 View · PDB DIMER_sp_Q499Z4_ZN672_HUMAN:225:274_1llm_D_1
3 5wjq 127:433 162 418 P:D · DNA:A,B 45.9% / 60.3% 88 View · PDB TFS_sp_Q499Z4_ZN672_HUMAN:162:418_5wjq_D_1
1 5v3m 127:433 127 418 P:C · DNA:A,B 43.2% / 57.2% 100 View · PDB TFS_sp_Q499Z4_ZN672_HUMAN:127:418_5v3m_C_1
2 5v3j 127:433 127 418 P:E · DNA:A,B 43.2% / 57.2% 100 View · PDB TFS_sp_Q499Z4_ZN672_HUMAN:127:418_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-36PF00096Zinc finger, C2H2 typeoverlaps 12-119
42-64PF00096Zinc finger, C2H2 typeoverlaps 12-119
199-221PF00096Zinc finger, C2H2 typeoverlaps 127-418
227-249PF00096Zinc finger, C2H2 typeoverlaps 127-418
255-277PF00096Zinc finger, C2H2 typeoverlaps 127-418
283-305PF00096Zinc finger, C2H2 typeoverlaps 127-418
311-333PF00096Zinc finger, C2H2 typeoverlaps 127-418
339-361PF13894C2H2-type zinc fingeroverlaps 127-418
367-389PF00096Zinc finger, C2H2 typeoverlaps 127-418
396-417PF00096Zinc finger, C2H2 typeoverlaps 127-418