ModCRE DB

Transcription factor

Q4LE39 - ARID4B

AT-rich interactive domain-containing protein 4B (ARID domain-containing protein 4B) (180 kDa Sin3-associated polypeptide) (Sin3-associated polypeptide p180) (Breast cancer-associated antigen BRCAA1) (Histone deacetylase complex subunit SAP180) (Retinoblastoma-binding protein 1-like 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1312 aa

3 Generated PWM 3 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE3
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q4LE39_ARI4B_HUMAN:308:394_1kqq_A_1 ModCRE Homology model TATACAAAATTTT Region 308-394 · 1 3D model Open · Scan
TFS_sp_Q4LE39_ARI4B_HUMAN:308:398_2oeh_A_1 ModCRE Homology model AGATTTTTAGAAA Region 308-398 · 1 3D model Open · Scan
TFS_sp_Q4LE39_ARI4B_HUMAN:583:632_8jho_M_1 ModCRE Homology model CAACGCGAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA Region 583-632 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1312 aa
308-398
583-632

Region 308-398 2 PWM

Residues
91 aa
Domains
PF01388 · ARID/BRIGHT DNA binding domain
3D models
2 active PDBs · 2 summary rows
Templates
1KQQ, 2OEH
Sources
Predicted = Low
Scan this region Show models

Region 583-632 1 PWM

Residues
50 aa
Domains
PF11717 · RNA binding activity-knot of a chromodomain
3D models
1 active PDB · 1 summary row
Templates
8JHO
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
3 active PDB models 3 summary rows
Region 308-3982 models · 2 summary rows
Actions
Predicted = Low TFS_sp_Q4LE39_ARI4B_HUMAN:308:394_1kqq_A_1 1kqq 308-394 View model · PDB
Predicted = Low TFS_sp_Q4LE39_ARI4B_HUMAN:308:398_2oeh_A_1 2oeh 308-398 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1kqq 308:398 308 394 P:A · DNA:B,C 34.5% / 63.2% 66 View · PDB TFS_sp_Q4LE39_ARI4B_HUMAN:308:394_1kqq_A_1
2 2oeh 308:398 308 398 P:A · DNA:B,C 31.9% / 61.5% 85 View · PDB TFS_sp_Q4LE39_ARI4B_HUMAN:308:398_2oeh_A_1
Region 583-6321 model · 1 summary row
Actions
Predicted = Low TFS_sp_Q4LE39_ARI4B_HUMAN:583:632_8jho_M_1 8jho 583-632 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 8jho 308:398 583 632 P:M · DNA:I,J 30.0% / 54.0% 16 View · PDB TFS_sp_Q4LE39_ARI4B_HUMAN:583:632_8jho_M_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
170-262PF08169RBB1NT (NUC162) domainNo overlap with loaded model regions
308-394PF01388ARID/BRIGHT DNA binding domainoverlaps 308-398
572-624PF11717RNA binding activity-knot of a chromodomainoverlaps 583-632