ModCRE DB

Transcription factor

Q4VAU3 - CDX1

CDX1 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 154 aa

93 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)9
MotifPredictionSourceDNA bindingSupportLogoActions
M05019_2.00 NN 70+% CisBP GGTCGTAAAAC 99.3% identity Open · Scan
MA0878.1 NN 70+% JASPAR GCAATAAAA 99.3% identity Open · Scan
M06224_2.00 NN 70+% CisBP ATCATAAAA 86.5% identity Open · Scan
M09186_2.00 NN 70+% CisBP ACATAAAT 85.3% identity Open · Scan
MA0465.1 NN 70+% JASPAR AAGCCATAAAA 80.1% identity Open · Scan
M09193_2.00 NN 70+% CisBP TTTTATGGCCTT 75.9% identity Open · Scan
MA1473.1 NN 70+% JASPAR GGCAATAAAAC 74.4% identity Open · Scan
M02211_2.00 NN 70+% CisBP TTAATTAC 71.9% identity Open · Scan
M10761_2.00 NN 70+% CisBP CATAAAT 71.6% identity Open · Scan
Nearest Neighbor (70% - 40%)84
MotifPredictionSourceDNA bindingSupportLogoActions
M09680_2.00 NN 70-40% CisBP TTAATTA 64.7% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 63.1% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 63.1% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 63.1% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 63.1% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 63.1% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 62.9% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 62.5% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 61.4% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 60.3% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 60.3% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 59.2% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 58.6% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 58.6% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 57.8% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 57.6% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 57.6% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 57.4% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 57.1% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 57.1% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 56.9% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 56.9% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 56.9% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 56.8% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 56.1% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 56.1% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 56.1% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 55.9% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 55.9% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 55.9% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 55.9% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 55.9% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 55.7% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 55.7% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 55.4% identity Open · Scan
M00474_2.00 NN 70-40% CisBP TTTATGACC 55.0% identity Open · Scan
M01250_2.00 NN 70-40% CisBP TCAATAATTG 55.0% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 54.8% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 54.8% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 54.3% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 54.3% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 54.3% identity Open · Scan
MA0907.1 NN 70-40% JASPAR GCTCGTAAAAA 54.3% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 54.2% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 53.8% identity Open · Scan
MA0911.1 NN 70-40% JASPAR GGTCGTAAAATT 53.6% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 53.5% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 53.5% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 53.5% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 53.5% identity Open · Scan
M00451_2.00 NN 70-40% CisBP ATTAATTA 52.9% identity Open · Scan
M02128_2.00 NN 70-40% CisBP ATTAATTA 52.9% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 52.6% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 52.6% identity Open · Scan
M02050_2.00 NN 70-40% CisBP TAATAATT 52.5% identity Open · Scan
M06910_2.00 NN 70-40% CisBP TCAATAATTGA 52.5% identity Open · Scan
M06914_2.00 NN 70-40% CisBP ACAATAATTGA 52.5% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 52.5% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 52.4% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 52.3% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 51.8% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 51.8% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 51.8% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 51.8% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 51.8% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 51.7% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 51.5% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 51.2% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 51.2% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 51.1% identity Open · Scan
M06924_2.00 NN 70-40% CisBP AAACCAATAATTGAAAATTAT 51.0% identity Open · Scan
M05392_2.00 NN 70-40% CisBP GTTAAGTGC 50.9% identity Open · Scan
M10754_2.00 NN 70-40% CisBP CAAGTGCGTG 50.9% identity Open · Scan
MA0618.1 NN 70-40% JASPAR TTAATTAG 50.9% identity Open · Scan
MA0896.1 NN 70-40% JASPAR ACAAGCAATTAATGAAT 50.9% identity Open · Scan
MA0898.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 50.9% identity Open · Scan
MA0650.1 NN 70-40% JASPAR CCAATAAAAA 50.8% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 50.6% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 50.5% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 50.0% identity Open · Scan
M02220_2.00 NN 70-40% CisBP CAATCATTGG 50.0% identity Open · Scan
M06326_2.00 NN 70-40% CisBP TTAATT 50.0% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 50.0% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 154 aa
45-100

Region 45-100 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJS
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 45-1001 model
Actions
Predicted = Low DIMER_Q4VAU3:45:100_5zjs_A_1 5zjs 45-100 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
10-33PF04731Caudal like protein activation regionNo overlap with loaded model regions
45-100PF00046Homeodomainoverlaps 45-100