Region 18-53 0 PWM
- Residues
- 36 aa
- Domains
- PF00046 · Homeodomain
- 3D models
- 10 active PDBs
- Templates
- 1HDD, 3A01, 3HDD, 4CYC, 4UUS, 5LTY, 5LUX, 6ES2, ...
- Sources
- Structure model
Transcription factor
Q4VAU5 - CDX1
CDX1 protein
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 94 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M05019_2.00 | Known | CisBP | GGTCGTAAAAC | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
94 aa
18-53
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 18-5310 models
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_Q4VAU5:18:40_1hdd_D_1 | 1hdd | 18-40 | View model · PDB |
| Predicted = Low | DIMER_Q4VAU5:18:40_3hdd_A_1 | 3hdd | 18-40 | View model · PDB |
| Predicted = Low | DIMER_Q4VAU5:20:40_3a01_B_1 | 3a01 | 20-40 | View model · PDB |
| Predicted = Low | DIMER_Q4VAU5:20:40_4cyc_A_1 | 4cyc | 20-40 | View model · PDB |
| Predicted = Low | DIMER_Q4VAU5:20:40_4uus_A_1 | 4uus | 20-40 | View model · PDB |
| Predicted = Low | TFS_Q4VAU5:18:44_5lux_K_1 | 5lux | 18-44 | View model · PDB |
| Predicted = Low | TFS_Q4VAU5:18:49_7q4n_K_1 | 7q4n | 18-49 | View model · PDB |
| Predicted = Low | TFS_Q4VAU5:18:50_5lty_K_1 | 5lty | 18-50 | View model · PDB |
| Predicted = Low | TFS_Q4VAU5:18:50_6es3_K_1 | 6es3 | 18-50 | View model · PDB |
| Predicted = Low | TFS_Q4VAU5:18:53_6es2_K_1 | 6es2 | 18-53 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 19-40 | PF00046 | Homeodomain | overlaps 18-53 |