ModCRE DB

Transcription factor

Q52MY0 - SRY

Sex-determining region Y protein (Testis-determining factor)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 198 aa

37 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA0084.1 NN 70+% JASPAR GTAAACAAT 98.4% identity Open · Scan
MA0866.1 NN 70+% JASPAR AACAATGGTAGTGTT 70.3% identity Open · Scan
Nearest Neighbor (70% - 40%)35
MotifPredictionSourceDNA bindingSupportLogoActions
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 69.5% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 67.8% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 67.0% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 67.0% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 67.0% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 66.6% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 64.6% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 64.2% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 63.6% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 57.5% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 56.2% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 55.8% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 55.0% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 54.7% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 54.7% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 54.7% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 54.7% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 54.5% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 53.9% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 53.7% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 52.5% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 52.5% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 52.2% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 52.0% identity Open · Scan
M00201_2.00 NN 70-40% CisBP ATTGTTCTGC 52.0% identity Open · Scan
M05754_2.00 NN 70-40% CisBP CATTGTTC 52.0% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 52.0% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 52.0% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 51.2% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 51.2% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 51.2% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 50.6% identity Open · Scan
M03981_2.00 NN 70-40% CisBP ATTGTTCGGTGGT 50.6% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 50.6% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 198 aa
56-140

Region 56-140 0 PWM

Residues
85 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1J46
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 56-1401 model
Actions
Predicted = Low TFS_Q52MY0:56:140_1j46_A_1 1j46 56-140 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
60-128PF00505HMG (high mobility group) boxoverlaps 56-140