ModCRE DB

Transcription factor

Q52MY1 - SRY

Sex-determining region Y protein (Testis-determining factor)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 166 aa

36 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0084.1 NN 70+% JASPAR GTAAACAAT 99.3% identity Open · Scan
M03538_2.00 NN 70+% CisBP AAACAATGACATTGTTT 70.5% identity Open · Scan
M05769_2.00 NN 70+% CisBP CCATTGTGAG 70.5% identity Open · Scan
MA0514.1 NN 70+% JASPAR CCTTTGTTTT 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)32
MotifPredictionSourceDNA bindingSupportLogoActions
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 69.1% identity Open · Scan
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 68.2% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 66.6% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 65.9% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 65.9% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 65.8% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 65.8% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 65.4% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 63.4% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 63.0% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 62.3% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 55.0% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 55.0% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 54.5% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 53.4% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 53.4% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 53.4% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 53.4% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 53.2% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 52.6% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 52.5% identity Open · Scan
M00201_2.00 NN 70-40% CisBP ATTGTTCTGC 52.0% identity Open · Scan
M05754_2.00 NN 70-40% CisBP CATTGTTC 52.0% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 51.2% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 51.2% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 51.1% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 50.6% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 50.6% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 50.6% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 50.0% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 50.0% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 166 aa
56-140

Region 56-140 0 PWM

Residues
85 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1J46
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 56-1401 model
Actions
Predicted = Low TFS_Q52MY1:56:140_1j46_A_1 1j46 56-140 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
60-128PF00505HMG (high mobility group) boxoverlaps 56-140