ModCRE DB

Transcription factor

Q53ER5

SRY-box 7 variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 388 aa

34 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M03516_2.00 NN 70+% CisBP AACAATGTTCATTGTT 99.7% identity Open · Scan
M03974_2.00 NN 70+% CisBP AACAATAACATTGTT 75.6% identity Open · Scan
Nearest Neighbor (70% - 40%)32
MotifPredictionSourceDNA bindingSupportLogoActions
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 65.8% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 65.3% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 65.3% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 64.5% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 62.9% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 61.3% identity Open · Scan
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 60.0% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 59.7% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 59.7% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 59.7% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 59.4% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 59.2% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 59.2% identity Open · Scan
M05769_2.00 NN 70-40% CisBP CCATTGTGAG 58.9% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 58.7% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 58.0% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 58.0% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 55.1% identity Open · Scan
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 54.2% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 53.5% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 53.5% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 53.3% identity Open · Scan
M03538_2.00 NN 70-40% CisBP AAACAATGACATTGTTT 52.9% identity Open · Scan
MA0514.1 NN 70-40% JASPAR CCTTTGTTTT 52.9% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 52.4% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 52.4% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 52.2% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 52.2% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 52.2% identity Open · Scan
M03981_2.00 NN 70-40% CisBP ATTGTTCGGTGGT 51.1% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 51.1% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 51.1% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 388 aa
42-119

Region 42-119 0 PWM

Residues
78 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1J46
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 42-1191 model
Actions
Predicted = Low TFS_Q53ER5:42:119_1j46_A_1 1j46 42-119 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
46-113PF00505HMG (high mobility group) boxoverlaps 42-119
192-231PF12067Sox 17/18 central domainNo overlap with loaded model regions