ModCRE DB

Transcription factor

Q53EU2

GATA binding protein 6 variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 595 aa

25 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)8
MotifPredictionSourceDNA bindingSupportLogoActions
MA1104.1 NN 70+% JASPAR AAAAGATAAGAAA 99.8% identity Open · Scan
MA0036.1 NN 70+% JASPAR GGATA 78.1% identity Open · Scan
M00166_2.00 NN 70+% CisBP TAGAGATAAG 77.2% identity Open · Scan
M10587_2.00 NN 70+% CisBP AGAGATAAGA 77.2% identity Open · Scan
MA0037.1 NN 70+% JASPAR AGATAG 77.2% identity Open · Scan
M10581_2.00 NN 70+% CisBP GCAGATAACA 75.5% identity Open · Scan
MA0035.1 NN 70+% JASPAR GGATGG 74.3% identity Open · Scan
MA0035.4 NN 70+% JASPAR TTCTAATCTAT 74.3% identity Open · Scan
Nearest Neighbor (70% - 40%)17
MotifPredictionSourceDNA bindingSupportLogoActions
M02007_2.00 NN 70-40% CisBP TTACAGATCT 60.7% identity Open · Scan
M02017_2.00 NN 70-40% CisBP CAGATAAG 60.7% identity Open · Scan
M02019_2.00 NN 70-40% CisBP TTAGAGATCT 60.5% identity Open · Scan
M02012_2.00 NN 70-40% CisBP ACGATCGA 57.5% identity Open · Scan
M01231_2.00 NN 70-40% CisBP CTGATAAG 55.5% identity Open · Scan
M02014_2.00 NN 70-40% CisBP TCAGATCTA 54.5% identity Open · Scan
M01545_2.00 NN 70-40% CisBP AGATAAG 54.0% identity Open · Scan
M00052_2.00 NN 70-40% CisBP ACGATATCGT 53.8% identity Open · Scan
M00049_2.00 NN 70-40% CisBP TACTGATAAG 53.4% identity Open · Scan
MA0482.2 NN 70-40% JASPAR TTCCTTATCTTT 52.4% identity Open · Scan
M04875_2.00 NN 70-40% CisBP GAGATAACGC 52.3% identity Open · Scan
M06885_2.00 NN 70-40% CisBP TCGATCGGATTAG 51.6% identity Open · Scan
MA0482.1 NN 70-40% JASPAR TCTTATCTCCC 51.5% identity Open · Scan
M06893_2.00 NN 70-40% CisBP CAGATCGGATT 51.4% identity Open · Scan
M03761_2.00 NN 70-40% CisBP GCGATAAG 51.3% identity Open · Scan
M02009_2.00 NN 70-40% CisBP CCGATCGA 50.0% identity Open · Scan
M06886_2.00 NN 70-40% CisBP GATGATGATGATGATGATG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 595 aa
387-494

Region 387-494 0 PWM

Residues
108 aa
Domains
PF00320 · GATA zinc finger PF00320 · GATA zinc finger
3D models
1 active PDB
Templates
3VD6
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 387-4941 model
Actions
Predicted = Low TFS_Q53EU2:387:494_3vd6_C_1 3vd6 387-494 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
147-376PF05349GATA-type transcription activator, N-terminalNo overlap with loaded model regions
390-423PF00320GATA zinc fingeroverlaps 387-494
444-477PF00320GATA zinc fingeroverlaps 387-494