ModCRE DB

Transcription factor

Q53FZ4

RAR-related orphan receptor C isoform a variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 518 aa

59 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA1151.1 NN 70+% JASPAR ATAAGTAGGTCA 99.8% identity Open · Scan
M05621_2.00 NN 70+% CisBP TAGGTCATGACCTA 99.5% identity Open · Scan
Nearest Neighbor (70% - 40%)57
MotifPredictionSourceDNA bindingSupportLogoActions
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 65.0% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 62.8% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 62.8% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 62.8% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 62.0% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 61.9% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 61.6% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 60.9% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 60.7% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 60.5% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 60.5% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 60.5% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 60.0% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 60.0% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 59.1% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 59.1% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 57.8% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 57.8% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 57.3% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 57.3% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 57.3% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 57.3% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 57.3% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 56.9% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 56.9% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 56.9% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 56.9% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 56.8% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 56.5% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 56.5% identity Open · Scan
M00814_2.00 NN 70-40% CisBP AAAGTCAAAT 56.4% identity Open · Scan
MA0676.1 NN 70-40% JASPAR AAAAGTCAA 56.4% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 56.0% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 55.7% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 55.3% identity Open · Scan
MA0164.1 NN 70-40% JASPAR CAAGCTT 54.1% identity Open · Scan
M02400_2.00 NN 70-40% CisBP GGGGTCAC 54.0% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 54.0% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 53.8% identity Open · Scan
MA0114.1 NN 70-40% JASPAR AGGCCAAAGGTCA 53.5% identity Open · Scan
MA0114.3 NN 70-40% JASPAR GGGGTCAAAGTCCAAT 53.5% identity Open · Scan
M09277_2.00 NN 70-40% CisBP GGGGGATCAAGAGGTCAAGG 53.3% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 52.7% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 52.7% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 52.7% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 52.6% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 52.6% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 52.6% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 52.6% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 52.1% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 51.4% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 51.3% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 50.6% identity Open · Scan
M02411_2.00 NN 70-40% CisBP AGGACATC 50.6% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 50.6% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 50.0% identity Open · Scan
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 518 aa
28-106

Region 28-106 0 PWM

Residues
79 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1HLZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 28-1061 model
Actions
Predicted = Low DIMER_Q53FZ4:28:106_1hlz_A_1 1hlz 28-106 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
30-98PF00105Double treble clef zinc finger, C4 typeoverlaps 28-106
321-486PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions