ModCRE DB

Transcription factor

Q53GI3 - ZNF394

Zinc finger protein 394 (Zinc finger protein with KRAB and SCAN domains 14)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 561 aa

3 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known3
MotifPredictionSourceDNA bindingSupportLogoActions
M08903_2.00 Known CisBP ATTCCATTCTATTCCATTCT Direct PWM Open · Scan
M08318_2.00 Known CisBP CCCGCCCCAGCTACTCCTCC Direct PWM Open · Scan
ZN394_HUMAN.H11MO.0.C Known HOCOMOCO AGAATGGAATAGAATGGAAT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 561 aa
330-547

Region 330-547 0 PWM

Residues
218 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 330-5471 model
Actions
Predicted = Low TFS_Q53GI3:330:547_5wjq_D_1 5wjq 330-547 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
60-147PF02023SCAN domainNo overlap with loaded model regions
154-182PF01352KRAB boxNo overlap with loaded model regions
358-380PF00096Zinc finger, C2H2 typeoverlaps 330-547
388-408PF00096Zinc finger, C2H2 typeoverlaps 330-547
414-436PF00096Zinc finger, C2H2 typeoverlaps 330-547
469-491PF00096Zinc finger, C2H2 typeoverlaps 330-547
499-519PF00096Zinc finger, C2H2 typeoverlaps 330-547
525-547PF00096Zinc finger, C2H2 typeoverlaps 330-547