ModCRE DB

Transcription factor

Q53QP1 - ZNFN1A2

UniProtKB entry deleted

12 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M10303_2.00 NN 70-40% CisBP TACTGGGAATACC 53.8% identity Open · Scan
MA1508.1 NN 70-40% JASPAR GAAACAGGAAGT 51.3% identity Open · Scan
M08320_2.00 NN 70-40% CisBP TTCCCTGCC 50.0% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q53QP1_Q53QP1_HUMAN:277:326_5kkq_A_1 ModCRE Homology model AAAATCCTATGCGT Region 277-326 · 1 3D model Open · Scan
TFS_tr_Q53QP1_Q53QP1_HUMAN:277:326_7txc_E_1 ModCRE Homology model GGGCTTGGGAGCGA Region 277-326 · 1 3D model Open · Scan
TFS_tr_Q53QP1_Q53QP1_HUMAN:279:326_5k5h_A_1 ModCRE Homology model ACAGTGGCAAC Region 279-326 · 1 3D model Open · Scan
TFS_tr_Q53QP1_Q53QP1_HUMAN:280:326_6ml7_A_1 ModCRE Homology model GCCAGCTTCGGCACC Region 280-326 · 1 3D model Open · Scan
TFS_tr_Q53QP1_Q53QP1_HUMAN:2:25_2kmk_A_1 ModCRE Homology model ACCCCTGCCCCC Region 2-25 · 1 3D model Open · Scan
TFS_tr_Q53QP1_Q53QP1_HUMAN:2:27_3uk3_C_1 ModCRE Homology model GCATGTGGGGG Region 2-27 · 1 3D model Open · Scan
TFS_tr_Q53QP1_Q53QP1_HUMAN:2:27_3uk3_D_1 ModCRE Homology model TGCCAACCCC Region 2-27 · 1 3D model Open · Scan
TFS_tr_Q53QP1_Q53QP1_HUMAN:2:27_4is1_C_1 ModCRE Homology model ACGTGTGGGGG Region 2-27 · 1 3D model Open · Scan
TFS_tr_Q53QP1_Q53QP1_HUMAN:2:27_4is1_D_1 ModCRE Homology model CCCCCTCACG Region 2-27 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

Region 2-27 5 PWM

Residues
26 aa
Domains
No overlapping PFAM annotation recorded
3D models
5 active PDBs · 1 summary row
Templates
2KMK, 3UK3, 4IS1
Sources
Predicted = Low
Scan this region Show models

Region 277-326 4 PWM

Residues
50 aa
Domains
No overlapping PFAM annotation recorded
3D models
4 active PDBs · 4 summary rows
Templates
5K5H, 5KKQ, 6ML7, 7TXC
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models 5 summary rows
Region 2-275 models · 1 summary row
Actions
Predicted = Low TFS_tr_Q53QP1_Q53QP1_HUMAN:2:25_2kmk_A_1 2kmk 2-25 View model · PDB
Predicted = Low TFS_tr_Q53QP1_Q53QP1_HUMAN:2:27_3uk3_C_1 3uk3 2-27 View model · PDB
Predicted = Low TFS_tr_Q53QP1_Q53QP1_HUMAN:2:27_3uk3_D_1 3uk3 2-27 View model · PDB
Predicted = Low TFS_tr_Q53QP1_Q53QP1_HUMAN:2:27_4is1_C_1 4is1 2-27 View model · PDB
Predicted = Low TFS_tr_Q53QP1_Q53QP1_HUMAN:2:27_4is1_D_1 4is1 2-27 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 2kmk 276:333 2 25 P:A · DNA:B,C 45.8% / 66.7% 29 View · PDB TFS_tr_Q53QP1_Q53QP1_HUMAN:2:25_2kmk_A_1
Region 277-3264 models · 4 summary rows
Actions
Predicted = Low TFS_tr_Q53QP1_Q53QP1_HUMAN:277:326_5kkq_A_1 5kkq 277-326 View model · PDB
Predicted = Low TFS_tr_Q53QP1_Q53QP1_HUMAN:277:326_7txc_E_1 7txc 277-326 View model · PDB
Predicted = Low TFS_tr_Q53QP1_Q53QP1_HUMAN:279:326_5k5h_A_1 5k5h 279-326 View model · PDB
Predicted = Low TFS_tr_Q53QP1_Q53QP1_HUMAN:280:326_6ml7_A_1 6ml7 280-326 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 7txc 276:333 277 326 P:E · DNA:A,B 32.0% / 42.0% 59 View · PDB TFS_tr_Q53QP1_Q53QP1_HUMAN:277:326_7txc_E_1
5 6ml7 276:333 280 326 P:A · DNA:E,F 29.8% / 40.4% 32 View · PDB TFS_tr_Q53QP1_Q53QP1_HUMAN:280:326_6ml7_A_1
2 5k5h 276:333 279 326 P:A · DNA:B,C 29.2% / 47.9% 43 View · PDB TFS_tr_Q53QP1_Q53QP1_HUMAN:279:326_5k5h_A_1
4 5kkq 276:333 277 326 P:A · DNA:B,C 28.0% / 48.0% 34 View · PDB TFS_tr_Q53QP1_Q53QP1_HUMAN:277:326_5kkq_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags6
DNA_RNApol_7kDzf-C2H2zf-C2H2_4zf-C2H2_6zf-C2H2_jazzf-H2C2_2