ModCRE DB

Transcription factor

Q59FE4

Zinc finger protein 83 variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 535 aa

114 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)108
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 69.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 68.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 67.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 67.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 65.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 65.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.9% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 63.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.5% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 63.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 63.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 61.8% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 61.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 61.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.6% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 60.5% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 60.4% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 59.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 59.6% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.6% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 59.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 59.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 59.0% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 58.9% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 58.8% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 58.6% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 58.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 58.2% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 57.7% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 57.6% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 57.6% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 57.4% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 57.3% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 57.2% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 57.1% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 57.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 57.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 57.0% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 56.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 56.8% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 56.5% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 56.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.1% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 55.6% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 55.4% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 55.2% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 55.2% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 55.1% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 54.9% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 54.4% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 54.4% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 54.4% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 54.3% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 54.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 54.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 53.9% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 53.9% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.8% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.8% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.8% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 53.6% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 53.6% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 53.6% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 53.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.5% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 53.4% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 53.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 53.1% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 53.1% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 53.1% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 53.0% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 53.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.0% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 53.0% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 52.9% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 52.7% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 52.6% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 52.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.5% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 52.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.2% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 52.1% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 51.9% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.7% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 51.6% identity Open · Scan
M07575_2.00 NN 70-40% CisBP TCTCCAAGGCGGCCAGCA 51.5% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 50.9% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.8% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.8% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 50.6% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.2% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.2% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 50.2% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.2% identity Open · Scan
M01457_2.00 NN 70-40% CisBP GCGCACGGAC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q59FE4_Q59FE4_HUMAN:334:407_1llm_D_1 ModCRE Homology model TCCGGCCGCGAA Region 334-407 · 1 3D model Open · Scan
TFS_tr_Q59FE4_Q59FE4_HUMAN:165:443_5wjq_D_1 ModCRE Homology model GTCCGGCTCGGGACACGCCCCCCCCCCC Region 165-443 · 1 3D model Open · Scan
TFS_tr_Q59FE4_Q59FE4_HUMAN:167:443_5v3j_E_1 ModCRE Homology model TCGGGGGACCTGTTCCCCTCCGGGGG Region 167-443 · 1 3D model Open · Scan
TFS_tr_Q59FE4_Q59FE4_HUMAN:167:443_5v3m_C_1 ModCRE Homology model CGCGACTTCCCTCCCCCGTCCTTGGT Region 167-443 · 1 3D model Open · Scan
TFS_tr_Q59FE4_Q59FE4_HUMAN:168:466_7w1m_H_1 ModCRE Homology model TTGGAGACGCGGCGGGGGGCGGCGCCACTCGGCCCGGCCCGAA Region 168-466 · 1 3D model Open · Scan
TFS_tr_Q59FE4_Q59FE4_HUMAN:289:442_2i13_A_1 ModCRE Homology model CGGCTTTAGTGTCTTGTTAGT Region 289-442 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 535 aa
165-466

Region 165-466 6 PWM

Residues
302 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 165-4666 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q59FE4_Q59FE4_HUMAN:334:407_1llm_D_1 1llm 334-407 View model · PDB
Predicted = Low TFS_tr_Q59FE4_Q59FE4_HUMAN:165:443_5wjq_D_1 5wjq 165-443 View model · PDB
Predicted = Low TFS_tr_Q59FE4_Q59FE4_HUMAN:167:443_5v3j_E_1 5v3j 167-443 View model · PDB
Predicted = Low TFS_tr_Q59FE4_Q59FE4_HUMAN:167:443_5v3m_C_1 5v3m 167-443 View model · PDB
Predicted = Low TFS_tr_Q59FE4_Q59FE4_HUMAN:168:466_7w1m_H_1 7w1m 168-466 View model · PDB
Predicted = Low TFS_tr_Q59FE4_Q59FE4_HUMAN:289:442_2i13_A_1 2i13 289-442 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 114:501 289 442 P:A · DNA:C,D 59.7% / 66.9% 100 View · PDB TFS_tr_Q59FE4_Q59FE4_HUMAN:289:442_2i13_A_1
1 5wjq 114:501 165 443 P:D · DNA:A,B 54.8% / 67.7% 99 View · PDB TFS_tr_Q59FE4_Q59FE4_HUMAN:165:443_5wjq_D_1
2 5v3m 114:501 167 443 P:C · DNA:A,B 53.1% / 67.5% 100 View · PDB TFS_tr_Q59FE4_Q59FE4_HUMAN:167:443_5v3m_C_1
3 5v3j 114:501 167 443 P:E · DNA:A,B 53.1% / 67.5% 100 View · PDB TFS_tr_Q59FE4_Q59FE4_HUMAN:167:443_5v3j_E_1
1 1llm 114:501 334,334 407,407 P:C,D · DNA:A,B 37.8% / 55.4% 83,85 View · PDB DIMER_tr_Q59FE4_Q59FE4_HUMAN:334:407_1llm_D_1
5 7w1m 114:501 168 466 P:H · DNA:F,G 36.7% / 51.6% 92 View · PDB TFS_tr_Q59FE4_Q59FE4_HUMAN:168:466_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
140-162PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
168-190PF00096Zinc finger, C2H2 typeoverlaps 165-466
196-218PF00096Zinc finger, C2H2 typeoverlaps 165-466
224-246PF00096Zinc finger, C2H2 typeoverlaps 165-466
252-274PF00096Zinc finger, C2H2 typeoverlaps 165-466
280-302PF00096Zinc finger, C2H2 typeoverlaps 165-466
308-330PF00096Zinc finger, C2H2 typeoverlaps 165-466
336-358PF00096Zinc finger, C2H2 typeoverlaps 165-466
364-386PF00096Zinc finger, C2H2 typeoverlaps 165-466
392-414PF00096Zinc finger, C2H2 typeoverlaps 165-466
420-442PF00096Zinc finger, C2H2 typeoverlaps 165-466
448-470PF00096Zinc finger, C2H2 typeoverlaps 165-466
476-498PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
504-526PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions