ModCRE DB

Transcription factor

Q59FS2

UniProtKB entry deleted

52 Generated PWM 16 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)42
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 62.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 59.0% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 58.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.1% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 56.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 56.5% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 56.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 54.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M06135_2.00 NN 70-40% CisBP CAGCCACGCCCACCT 54.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 54.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 53.5% identity Open · Scan
M06051_2.00 NN 70-40% CisBP CACCTGC 53.3% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 53.2% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 53.1% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.0% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 52.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.6% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 52.6% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 52.6% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 52.4% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 51.5% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 51.5% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 51.4% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.2% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 50.9% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.4% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 50.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.1% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.0% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.0% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q59FS2_Q59FS2_HUMAN:264:370_5egb_A_1 ModCRE Homology model CCCCCCGCAGGAGGGGGT Region 264-370 · 1 3D model Open · Scan
TFS_tr_Q59FS2_Q59FS2_HUMAN:264:370_5eh2_F_1 ModCRE Homology model CCCCCCGGGGGGGGGGCCC Region 264-370 · 1 3D model Open · Scan
TFS_tr_Q59FS2_Q59FS2_HUMAN:264:370_5ei9_E_1 ModCRE Homology model GCCCCCGGGGGGGGGGGC Region 264-370 · 1 3D model Open · Scan
TFS_tr_Q59FS2_Q59FS2_HUMAN:265:396_2i13_A_1 ModCRE Homology model TTTTACCAAAAAAAGCAGTCC Region 265-396 · 1 3D model Open · Scan
TFS_tr_Q59FS2_Q59FS2_HUMAN:265:397_5wjq_D_1 ModCRE Homology model GGGGGGGGGGGGGGGGCCCCCCT Region 265-397 · 1 3D model Open · Scan
TFS_tr_Q59FS2_Q59FS2_HUMAN:268:369_2jp9_A_1 ModCRE Homology model CCCGGAGGGGGGCCCCG Region 268-369 · 1 3D model Open · Scan
TFS_tr_Q59FS2_Q59FS2_HUMAN:288:369_1p47_A_1 ModCRE Homology model GGACCGGGGTCGGCCC Region 288-369 · 1 3D model Open · Scan
TFS_tr_Q59FS2_Q59FS2_HUMAN:288:369_4r2c_A_1 ModCRE Homology model GCCCGGGCCC Region 288-369 · 1 3D model Open · Scan
TFS_tr_Q59FS2_Q59FS2_HUMAN:288:369_4r2d_A_1 ModCRE Homology model GGCCGGGCCC Region 288-369 · 1 3D model Open · Scan
TFS_tr_Q59FS2_Q59FS2_HUMAN:288:369_4x9j_A_1 ModCRE Homology model GGCGGGGCCG Region 288-369 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

Region 264-397 10 PWM

Residues
134 aa
Domains
No overlapping PFAM annotation recorded
3D models
10 active PDBs
Templates
1P47, 2I13, 2JP9, 4R2C, 4R2D, 4X9J, 5EGB, 5EH2, ...
Sources
Predicted = Low
Scan this region Show models

Region 399-677 0 PWM

Residues
279 aa
Domains
No overlapping PFAM annotation recorded
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
16 active PDB models 6 summary rows
Region 264-39710 models
Actions
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:264:370_5egb_A_1 5egb 264-370 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:264:370_5eh2_F_1 5eh2 264-370 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:264:370_5ei9_E_1 5ei9 264-370 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:265:396_2i13_A_1 2i13 265-396 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:265:397_5wjq_D_1 5wjq 265-397 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:268:369_2jp9_A_1 2jp9 268-369 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:288:369_1p47_A_1 1p47 288-369 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:288:369_4r2c_A_1 4r2c 288-369 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:288:369_4r2d_A_1 4r2d 288-369 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:288:369_4x9j_A_1 4x9j 288-369 View model · PDB
Region 399-6776 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q59FS2_Q59FS2_HUMAN:596:647_1llm_D_1 1llm 596-647 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:399:677_5wjq_D_1 5wjq 399-677 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:401:677_5v3j_E_1 5v3j 401-677 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:401:677_5v3m_C_1 5v3m 401-677 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:495:648_2i13_A_1 2i13 495-648 View model · PDB
Predicted = Low TFS_tr_Q59FS2_Q59FS2_HUMAN:511:621_5ei9_E_1 5ei9 511-621 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 262:679 511 621 P:E · DNA:A,B 70.3% / 79.3% 100 View · PDB TFS_tr_Q59FS2_Q59FS2_HUMAN:511:621_5ei9_E_1
4 2i13 262:679 495 648 P:A · DNA:C,D 54.5% / 68.2% 100 View · PDB TFS_tr_Q59FS2_Q59FS2_HUMAN:495:648_2i13_A_1
1 1llm 262:679 596,596 647,647 P:C,D · DNA:A,B 48.1% / 55.8% 59,61 View · PDB DIMER_tr_Q59FS2_Q59FS2_HUMAN:596:647_1llm_D_1
2 5v3m 262:679 401 677 P:C · DNA:A,B 47.7% / 62.8% 100 View · PDB TFS_tr_Q59FS2_Q59FS2_HUMAN:401:677_5v3m_C_1
3 5v3j 262:679 401 677 P:E · DNA:A,B 47.7% / 62.8% 100 View · PDB TFS_tr_Q59FS2_Q59FS2_HUMAN:401:677_5v3j_E_1
1 5wjq 262:679 399 677 P:D · DNA:A,B 47.3% / 65.2% 99 View · PDB TFS_tr_Q59FS2_Q59FS2_HUMAN:399:677_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags11
BolAC1_4KRABYippeeZn_ribbon_recomzf-C2H2zf-C2H2_4zf-C2H2_6zf-C2H2_jazzf-H2C2_2zf-RING_3