Region 389-471 4 PWM
- Residues
- 83 aa
- Domains
- PF02376 · CUT domain
- 3D models
- 4 active PDBs · 4 summary rows
- Templates
- 2D5V, 2O49, 2O4A, 6LFF
- Sources
- Predicted = Low
Transcription factor
Q59FT3
SATB family member 2 variant
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 763 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE9
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| DIMER_tr_Q59FT3_Q59FT3_HUMAN:646:697_1jgg_B_1 | ModCRE | Homology model | AAATGTTATG | Region 646-697 · 1 3D model | Open · Scan | |
| TFS_tr_Q59FT3_Q59FT3_HUMAN:389:471_2o49_A_1 | ModCRE | Homology model | GTTGCTATGCA | Region 389-471 · 1 3D model | Open · Scan | |
| TFS_tr_Q59FT3_Q59FT3_HUMAN:389:471_2o4a_A_1 | ModCRE | Homology model | ATAGCTTTACA | Region 389-471 · 1 3D model | Open · Scan | |
| TFS_tr_Q59FT3_Q59FT3_HUMAN:390:471_6lff_A_1 | ModCRE | Homology model | AAATGCCAA | Region 390-471 · 1 3D model | Open · Scan | |
| TFS_tr_Q59FT3_Q59FT3_HUMAN:393:459_2d5v_A_1 | ModCRE | Homology model | AAGGGGAGCCCTT | Region 393-459 · 1 3D model | Open · Scan | |
| TFS_tr_Q59FT3_Q59FT3_HUMAN:513:589_2o49_A_1 | ModCRE | Homology model | GCTATAGCTAA | Region 513-589 · 1 3D model | Open · Scan | |
| TFS_tr_Q59FT3_Q59FT3_HUMAN:513:589_2o4a_A_1 | ModCRE | Homology model | TGCATAGCTAA | Region 513-589 · 1 3D model | Open · Scan | |
| TFS_tr_Q59FT3_Q59FT3_HUMAN:596:697_6e8c_A_1 | ModCRE | Homology model | TAAAAAGCCTTTTGGTG | Region 596-697 · 1 3D model | Open · Scan | |
| TFS_tr_Q59FT3_Q59FT3_HUMAN:646:697_1jgg_B_1 | ModCRE | Homology model | AAATGTTATG | Region 646-697 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
763 aa
389-471
513-589
596-697
Region 513-589 2 PWM
- Residues
- 77 aa
- Domains
- PF02376 · CUT domain
- 3D models
- 2 active PDBs
- Templates
- 2O49, 2O4A
- Sources
- Predicted = Low
Region 596-697 3 PWM
- Residues
- 102 aa
- Domains
- PF00046 · Homeodomain
- 3D models
- 3 active PDBs · 2 summary rows
- Templates
- 1JGG, 6E8C
- Sources
- Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models
6 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 389-4714 models · 4 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_Q59FT3_Q59FT3_HUMAN:389:471_2o49_A_1 | 2o49 | 389-471 | View model · PDB |
| Predicted = Low | TFS_tr_Q59FT3_Q59FT3_HUMAN:389:471_2o4a_A_1 | 2o4a | 389-471 | View model · PDB |
| Predicted = Low | TFS_tr_Q59FT3_Q59FT3_HUMAN:390:471_6lff_A_1 | 6lff | 390-471 | View model · PDB |
| Predicted = Low | TFS_tr_Q59FT3_Q59FT3_HUMAN:393:459_2d5v_A_1 | 2d5v | 393-459 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 2o4a | 389:471 | 389 | 471 | P:A · DNA:B,C | 89.2% / 94.0% | 98 | View · PDB TFS_tr_Q59FT3_Q59FT3_HUMAN:389:471_2o4a_A_1 |
| 2 | 2o49 | 389:471 | 389 | 471 | P:A · DNA:B,C | 89.2% / 94.0% | 98 | View · PDB TFS_tr_Q59FT3_Q59FT3_HUMAN:389:471_2o49_A_1 |
| 3 | 6lff | 389:471 | 390 | 471 | P:A · DNA:C,D | 89.0% / 93.9% | 100 | View · PDB TFS_tr_Q59FT3_Q59FT3_HUMAN:390:471_6lff_A_1 |
| 4 | 2d5v | 389:471 | 393 | 459 | P:A · DNA:C,D | 37.3% / 59.7% | 48 | View · PDB TFS_tr_Q59FT3_Q59FT3_HUMAN:393:459_2d5v_A_1 |
Region 513-5892 models
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_Q59FT3_Q59FT3_HUMAN:513:589_2o49_A_1 | 2o49 | 513-589 | View model · PDB |
| Predicted = Low | TFS_tr_Q59FT3_Q59FT3_HUMAN:513:589_2o4a_A_1 | 2o4a | 513-589 | View model · PDB |
Region 596-6973 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_tr_Q59FT3_Q59FT3_HUMAN:646:697_1jgg_B_1 | 1jgg | 646-697 | View model · PDB |
| Predicted = Low | TFS_tr_Q59FT3_Q59FT3_HUMAN:596:697_6e8c_A_1 | 6e8c | 596-697 | View model · PDB |
| Predicted = Low | TFS_tr_Q59FT3_Q59FT3_HUMAN:646:697_1jgg_B_1 | 1jgg | 646-697 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 1jgg | 389:471 | 646,646 | 697,697 | P:A,B · DNA:C,D | 36.5% / 55.8% | 89,89 | View · PIR DIMER_tr_Q59FT3_Q59FT3_HUMAN:646:697_1jgg_B_1 |
| 5 | 1jgg | 389:471 | 646,646 | 697,697 | P:A,B · DNA:C,D | 36.5% / 55.8% | 89,89 | View · PDB TFS_tr_Q59FT3_Q59FT3_HUMAN:646:697_1jgg_B_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 89-186 | PF16534 | Ubiquitin-like oligomerisation domain of SATB | No overlap with loaded model regions |
| 193-263 | PF16557 | CUT1-like DNA-binding domain of SATB | No overlap with loaded model regions |
| 390-464 | PF02376 | CUT domain | overlaps 389-471 |
| 511-586 | PF02376 | CUT domain | overlaps 513-589 |
| 646-701 | PF00046 | Homeodomain | overlaps 596-697 |