Region 80-106 2 PWM
- Residues
- 27 aa
- Domains
- PF00249 · Myb-like DNA-binding domain
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 3OSF, 3OSG
- Sources
- Predicted = Low
Transcription factor
Q59FW1
Metastasis associated protein variant
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 511 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_Q59FW1_Q59FW1_HUMAN:80:106_3osf_A_1 | ModCRE | Homology model | TTGAAATGAACCC | Region 80-106 · 1 3D model | Open · Scan | |
| TFS_tr_Q59FW1_Q59FW1_HUMAN:80:106_3osg_A_1 | ModCRE | Homology model | TGGGGGAAAAAC | Region 80-106 · 1 3D model | Open · Scan |
No DNA-interacting structure identified
None of the 2 assessable structural models contains a protein–DNA non-hydrogen atom contact within 4.5 Å.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
511 aa
80-106
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models
2 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 80-1062 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_Q59FW1_Q59FW1_HUMAN:80:106_3osf_A_1 | 3osf | 80-106 | View model · PDB |
| Predicted = Low | TFS_tr_Q59FW1_Q59FW1_HUMAN:80:106_3osg_A_1 | 3osg | 80-106 | View model · PDB |
Model-summary evidence imported for this region.
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 78-123 | PF00249 | Myb-like DNA-binding domain | overlaps 80-106 |
| 185-221 | PF00320 | GATA zinc finger | No overlap with loaded model regions |
| 256-333 | PF17226 | MTA R1 domain | No overlap with loaded model regions |