ModCRE DB

Transcription factor

Q59FW3

Thyroid hormone receptor alpha (Nuclear receptor subfamily 1 group A member 1)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 397 aa

20 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M09275_2.00 NN 70+% CisBP GGGTCACTTCAGGTCAG 98.2% identity Open · Scan
M05635_2.00 NN 70+% CisBP GTGACCTCAATGAGGTCAC 91.1% identity Open · Scan
MA1574.1 NN 70+% JASPAR GGGGTCAAAGGTCAT 84.4% identity Open · Scan
Nearest Neighbor (70% - 40%)17
MotifPredictionSourceDNA bindingSupportLogoActions
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 66.6% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 63.0% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 60.2% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 60.2% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 58.8% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 57.1% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 56.2% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 56.2% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 54.9% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 54.3% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 54.2% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 53.0% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 53.0% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 52.9% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 51.8% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 50.6% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 397 aa
36-122

Region 36-122 0 PWM

Residues
87 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
2HAN
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 36-1221 model
Actions
Predicted = Low DIMER_Q59FW3:36:122_2han_B_1 2han 36-122 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
39-108PF00105Double treble clef zinc finger, C4 typeoverlaps 36-122
202-370PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions