ModCRE DB

Transcription factor

Q59G30

Gonadotropin inducible transcription repressor 1 variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 485 aa

112 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)106
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 69.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 65.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 64.5% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 64.3% identity Open · Scan
M07677_2.00 NN 70-40% CisBP CCCCGCCTCCCTTGCCGCTGC 63.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 63.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.3% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 61.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.1% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.8% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 60.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 60.5% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 59.6% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 59.6% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 59.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 58.6% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 58.4% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 58.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 58.2% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 58.1% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 57.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.5% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 57.4% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 57.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 57.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 57.1% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 56.8% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 56.7% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 56.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 56.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 56.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 56.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.5% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 55.4% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 55.3% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 55.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 55.1% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 55.0% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 55.0% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 54.8% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.8% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 54.8% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 54.7% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 54.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 54.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 54.6% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 54.5% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 54.4% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 54.3% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 54.2% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 54.2% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 54.2% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 54.1% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.9% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 53.8% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 53.7% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 53.6% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.6% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 53.4% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 53.3% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 53.2% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 53.1% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 52.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 52.7% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 52.4% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 52.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 52.1% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 51.9% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 51.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 51.7% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 51.7% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 51.7% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 51.6% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 51.5% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.4% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 51.3% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.3% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 51.2% identity Open · Scan
M07750_2.00 NN 70-40% CisBP CTTCTGACACCA 51.2% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 51.2% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.0% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.9% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 50.9% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.2% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 50.1% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.1% identity Open · Scan
M01531_2.00 NN 70-40% CisBP CCCCCCCTAAAT 50.0% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.0% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 50.0% identity Open · Scan
MA0516.1 NN 70-40% JASPAR GCCCCGCCCCCTCCC 50.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q59G30_Q59G30_HUMAN:277:328_1llm_D_1 ModCRE Homology model TGCGGCGCGCGT Region 277-328 · 1 3D model Open · Scan
TFS_tr_Q59G30_Q59G30_HUMAN:168:442_5v3j_E_1 ModCRE Homology model CCCCCCCCCCGGGGTGCGGGGGGGGG Region 168-442 · 1 3D model Open · Scan
TFS_tr_Q59G30_Q59G30_HUMAN:168:442_5v3m_C_1 ModCRE Homology model ACCGAGTGGAAGAAGTTACGCATTGG Region 168-442 · 1 3D model Open · Scan
TFS_tr_Q59G30_Q59G30_HUMAN:184:437_7w1m_H_1 ModCRE Homology model TTGGGCGGCGCTTTGAACCGGCGCCTTTTGGCGCAGGAGG Region 184-437 · 1 3D model Open · Scan
TFS_tr_Q59G30_Q59G30_HUMAN:192:467_5wjq_D_1 ModCRE Homology model CGGGGGGTGTGAAGGAGAGGGGCCTTGA Region 192-467 · 1 3D model Open · Scan
TFS_tr_Q59G30_Q59G30_HUMAN:288:441_2i13_A_1 ModCRE Homology model CTGAAGAAGCAGGCTTATAGT Region 288-441 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 485 aa
168-467

Region 168-467 6 PWM

Residues
300 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 168-4676 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q59G30_Q59G30_HUMAN:277:328_1llm_D_1 1llm 277-328 View model · PDB
Predicted = Low TFS_tr_Q59G30_Q59G30_HUMAN:168:442_5v3j_E_1 5v3j 168-442 View model · PDB
Predicted = Low TFS_tr_Q59G30_Q59G30_HUMAN:168:442_5v3m_C_1 5v3m 168-442 View model · PDB
Predicted = Low TFS_tr_Q59G30_Q59G30_HUMAN:184:437_7w1m_H_1 7w1m 184-437 View model · PDB
Predicted = Low TFS_tr_Q59G30_Q59G30_HUMAN:192:467_5wjq_D_1 5wjq 192-467 View model · PDB
Predicted = Low TFS_tr_Q59G30_Q59G30_HUMAN:288:441_2i13_A_1 2i13 288-441 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 5v3m 168:467 168 442 P:C · DNA:A,B 55.4% / 71.7% 99 View · PDB TFS_tr_Q59G30_Q59G30_HUMAN:168:442_5v3m_C_1
3 5v3j 168:467 168 442 P:E · DNA:A,B 55.4% / 71.7% 99 View · PDB TFS_tr_Q59G30_Q59G30_HUMAN:168:442_5v3j_E_1
1 5wjq 168:467 192 467 P:D · DNA:A,B 55.2% / 70.6% 98 View · PDB TFS_tr_Q59G30_Q59G30_HUMAN:192:467_5wjq_D_1
4 2i13 168:467 288 441 P:A · DNA:C,D 55.2% / 68.2% 100 View · PDB TFS_tr_Q59G30_Q59G30_HUMAN:288:441_2i13_A_1
1 1llm 168:467 277,277 328,328 P:C,D · DNA:A,B 40.4% / 57.7% 59,61 View · PDB DIMER_tr_Q59G30_Q59G30_HUMAN:277:328_1llm_D_1
5 7w1m 168:467 184 437 P:H · DNA:F,G 34.7% / 49.8% 78 View · PDB TFS_tr_Q59G30_Q59G30_HUMAN:184:437_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
195-217PF00096Zinc finger, C2H2 typeoverlaps 168-467
223-245PF00096Zinc finger, C2H2 typeoverlaps 168-467
251-273PF00096Zinc finger, C2H2 typeoverlaps 168-467
279-301PF00096Zinc finger, C2H2 typeoverlaps 168-467
307-329PF00096Zinc finger, C2H2 typeoverlaps 168-467
335-357PF00096Zinc finger, C2H2 typeoverlaps 168-467
363-385PF00096Zinc finger, C2H2 typeoverlaps 168-467
391-413PF00096Zinc finger, C2H2 typeoverlaps 168-467
419-441PF00096Zinc finger, C2H2 typeoverlaps 168-467