ModCRE DB

Transcription factor

Q59HC5

Zinc finger protein 236 variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1387 aa

27 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)21
MotifPredictionSourceDNA bindingSupportLogoActions
M07625_2.00 NN 70-40% CisBP TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 65.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 55.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 54.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 52.9% identity Open · Scan
M01868_2.00 NN 70-40% CisBP TCTTGGCG 52.7% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 51.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 51.7% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 51.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 51.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 51.2% identity Open · Scan
M01186_2.00 NN 70-40% CisBP TACCCCGCAC 51.0% identity Open · Scan
M04430_2.00 NN 70-40% CisBP GACCACGCCCA 50.5% identity Open · Scan
MA0742.1 NN 70-40% JASPAR GACCACGCCCTTATT 50.5% identity Open · Scan
MA1516.1 NN 70-40% JASPAR GACCACGCCCA 50.5% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.4% identity Open · Scan
M01042_2.00 NN 70-40% CisBP TGGGACCTGA 50.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.0% identity Open · Scan
MA0599.1 NN 70-40% JASPAR GCCCCGCCCC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q59HC5_Q59HC5_HUMAN:77:126_1llm_D_1 ModCRE Homology model CCCCGCCGCGGA Region 77-126 · 1 3D model Open · Scan
TFS_tr_Q59HC5_Q59HC5_HUMAN:22:273_8ssr_A_1 ModCRE Homology model TGGGAACAGGGGTTTATACGGGTCCGGGACCGGGG Region 22-273 · 1 3D model Open · Scan
TFS_tr_Q59HC5_Q59HC5_HUMAN:24:305_5v3j_E_1 ModCRE Homology model GGGAGATGGGTGCCCATCCTGAATGT Region 24-305 · 1 3D model Open · Scan
TFS_tr_Q59HC5_Q59HC5_HUMAN:24:305_5v3m_C_1 ModCRE Homology model GCCGGGTGGGGATATGAAGGCGGGCG Region 24-305 · 1 3D model Open · Scan
TFS_tr_Q59HC5_Q59HC5_HUMAN:26:277_5wjq_D_1 ModCRE Homology model TATTGTTGAACTTTGGCCGGCCGGCCCC Region 26-277 · 1 3D model Open · Scan
TFS_tr_Q59HC5_Q59HC5_HUMAN:508:785_7w1m_H_1 ModCRE Homology model TTGGTGCGGCCCCCCCCAATTATATTTACCAGCCCGGCCAAA Region 508-785 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1387 aa
22-305
508-785

Region 22-305 5 PWM

Residues
284 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
5 active PDBs · 5 summary rows
Templates
1LLM, 5V3J, 5V3M, 5WJQ, 8SSR
Sources
Predicted = Low
Scan this region Show models

Region 508-785 1 PWM

Residues
278 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB · 1 summary row
Templates
7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 22-3055 models · 5 summary rows
Actions
Predicted = Low DIMER_tr_Q59HC5_Q59HC5_HUMAN:77:126_1llm_D_1 1llm 77-126 View model · PDB
Predicted = Low TFS_tr_Q59HC5_Q59HC5_HUMAN:22:273_8ssr_A_1 8ssr 22-273 View model · PDB
Predicted = Low TFS_tr_Q59HC5_Q59HC5_HUMAN:24:305_5v3j_E_1 5v3j 24-305 View model · PDB
Predicted = Low TFS_tr_Q59HC5_Q59HC5_HUMAN:24:305_5v3m_C_1 5v3m 24-305 View model · PDB
Predicted = Low TFS_tr_Q59HC5_Q59HC5_HUMAN:26:277_5wjq_D_1 5wjq 26-277 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 18:305 77,77 126,126 P:C,D · DNA:A,B 52.0% / 66.0% 57,58 View · PDB DIMER_tr_Q59HC5_Q59HC5_HUMAN:77:126_1llm_D_1
1 5wjq 18:305 26 277 P:D · DNA:A,B 34.5% / 48.4% 87 View · PDB TFS_tr_Q59HC5_Q59HC5_HUMAN:26:277_5wjq_D_1
5 8ssr 18:305 22 273 P:A · DNA:B,C 32.8% / 47.1% 95 View · PDB TFS_tr_Q59HC5_Q59HC5_HUMAN:22:273_8ssr_A_1
2 5v3m 18:305 24 305 P:C · DNA:A,B 30.7% / 45.6% 98 View · PDB TFS_tr_Q59HC5_Q59HC5_HUMAN:24:305_5v3m_C_1
3 5v3j 18:305 24 305 P:E · DNA:A,B 30.7% / 45.6% 98 View · PDB TFS_tr_Q59HC5_Q59HC5_HUMAN:24:305_5v3j_E_1
Region 508-7851 model · 1 summary row
Actions
Predicted = Low TFS_tr_Q59HC5_Q59HC5_HUMAN:508:785_7w1m_H_1 7w1m 508-785 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 7w1m 18:305 508 785 P:H · DNA:F,G 26.8% / 45.7% 86 View · PDB TFS_tr_Q59HC5_Q59HC5_HUMAN:508:785_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
24-46PF00096Zinc finger, C2H2 typeoverlaps 22-305
52-74PF00096Zinc finger, C2H2 typeoverlaps 22-305
80-102PF00096Zinc finger, C2H2 typeoverlaps 22-305
108-130PF00096Zinc finger, C2H2 typeoverlaps 22-305
227-249PF00096Zinc finger, C2H2 typeoverlaps 22-305
283-305PF00096Zinc finger, C2H2 typeoverlaps 22-305
509-531PF00096Zinc finger, C2H2 typeoverlaps 508-785
537-559PF00096Zinc finger, C2H2 typeoverlaps 508-785
565-587PF00096Zinc finger, C2H2 typeoverlaps 508-785
724-747PF13465Zinc-finger double domainoverlaps 508-785
765-787PF00096Zinc finger, C2H2 typeoverlaps 508-785
1230-1250PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
1264-1286PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
1292-1314PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
1320-1343PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions