ModCRE DB

Transcription factor

Q59HH0

Retinoblastoma-associated protein (pRb)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 960 aa

4 Generated PWM 4 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_4roc_A_1 ModCRE Homology model AACAAATTTTAAGTTTTTTA Region 92-137 · 1 3D model Open · Scan
TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_4rod_A_1 ModCRE Homology model TAAAATTTTTTGGTATAAAA Region 92-137 · 1 3D model Open · Scan
TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_8ity_V_1 ModCRE Homology model ATAAAAATTTTTTGCAAAAA Region 92-137 · 1 3D model Open · Scan
TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_8iue_V_1 ModCRE Homology model AAAACAGTTTTTAAAAAA Region 92-137 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 960 aa
92-137

Region 92-137 4 PWM

Residues
46 aa
Domains
No overlapping PFAM annotation recorded
3D models
4 active PDBs · 4 summary rows
Templates
4ROC, 4ROD, 8ITY, 8IUE
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
4 active PDB models 4 summary rows
Region 92-1374 models · 4 summary rows
Actions
Predicted = Low TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_4roc_A_1 4roc 92-137 View model · PDB
Predicted = Low TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_4rod_A_1 4rod 92-137 View model · PDB
Predicted = Low TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_8ity_V_1 8ity 92-137 View model · PDB
Predicted = Low TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_8iue_V_1 8iue 92-137 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 8iue 92:137 92 137 P:V · DNA:X,Y 26.1% / 50.0% 12 View · PDB TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_8iue_V_1
2 8ity 92:137 92 137 P:V · DNA:X,Y 26.1% / 50.0% 12 View · PDB TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_8ity_V_1
3 4rod 92:137 92 137 P:A · DNA:N,T 26.1% / 50.0% 15 View · PDB TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_4rod_A_1
4 4roc 92:137 92 137 P:A · DNA:N,T 26.1% / 50.0% 15 View · PDB TFS_tr_Q59HH0_Q59HH0_HUMAN:92:137_4roc_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
145-258PF11934Domain of unknown function (DUF3452)No overlap with loaded model regions
405-605PF01858Retinoblastoma-associated protein A domainNo overlap with loaded model regions
678-797PF01857Retinoblastoma-associated protein B domainNo overlap with loaded model regions
800-957PF08934Rb C-terminal domainNo overlap with loaded model regions