ModCRE DB

Transcription factor

Q5EBL2 - ZNF628

Zinc finger protein 628

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1059 aa

46 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)35
MotifPredictionSourceDNA bindingSupportLogoActions
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 56.6% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 56.6% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 56.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 55.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.4% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 54.1% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.2% identity Open · Scan
M06112_2.00 NN 70-40% CisBP CTACTTTCACCGGGG 53.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.6% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 52.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 52.3% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 52.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 52.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.2% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 51.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.4% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.3% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
MA0740.1 NN 70-40% JASPAR GGCCACGCCCCCTT 51.2% identity Open · Scan
MA0741.1 NN 70-40% JASPAR GCCACGCCCCC 51.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 51.1% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.0% identity Open · Scan
M08320_2.00 NN 70-40% CisBP TTCCCTGCC 50.7% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 50.7% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.2% identity Open · Scan
M00765_2.00 NN 70-40% CisBP CCCGCCCCC 50.0% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 50.0% identity Open · Scan
MA0079.1 NN 70-40% JASPAR GGGGCGGGGT 50.0% identity Open · Scan
ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q5EBL2_ZN628_HUMAN:592:640_1llm_D_1 ModCRE Homology model GCCCCGCGCAAT Region 592-640 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:240:314_5v3m_C_1 ModCRE Homology model GGCCCGGCGGGGGCCC Region 240-314 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:240:314_5wjq_D_1 ModCRE Homology model GGCCCGGCAGGGGCGC Region 240-314 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:290:314_5egb_A_1 ModCRE Homology model ACACTAGTGGATG Region 290-314 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:290:314_5eh2_F_1 ModCRE Homology model CACGCAGTGGAT Region 290-314 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:290:314_5ei9_E_1 ModCRE Homology model CGCCCACGGGAT Region 290-314 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:358:644_5v3j_E_1 ModCRE Homology model GCCCGGGGGGGGCCCCTCTCGGGGGC Region 358-644 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:358:644_5v3m_C_1 ModCRE Homology model CCCCCGGGGGGGGGGCGTCAATACTG Region 358-644 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:36:224_8sss_A_1 ModCRE Homology model CACAACAGCGCAAAGGCGCCGCC Region 36-224 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:36:226_5wjq_D_1 ModCRE Homology model CCCGTCAGGGGGGTCGGGCCGCCCC Region 36-226 · 1 3D model Open · Scan
TFS_sp_Q5EBL2_ZN628_HUMAN:45:198_2i13_A_1 ModCRE Homology model ACTCCCTAGTAAGGCAAGATG Region 45-198 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1059 aa
36-226
240-314
358-644

Region 36-226 3 PWM

Residues
191 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
3 active PDBs · 3 summary rows
Templates
2I13, 5WJQ, 8SSS
Sources
Predicted = Low
Scan this region Show models

Region 240-314 5 PWM

Residues
75 aa
Domains
No overlapping PFAM annotation recorded
3D models
5 active PDBs
Templates
5EGB, 5EH2, 5EI9, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models

Region 358-644 3 PWM

Residues
287 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
3 active PDBs · 3 summary rows
Templates
1LLM, 5V3J, 5V3M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 36-2263 models · 3 summary rows
Actions
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:36:224_8sss_A_1 8sss 36-224 View model · PDB
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:36:226_5wjq_D_1 5wjq 36-226 View model · PDB
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:45:198_2i13_A_1 2i13 45-198 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 356:659 45 198 P:A · DNA:C,D 47.4% / 63.6% 100 View · PDB TFS_sp_Q5EBL2_ZN628_HUMAN:45:198_2i13_A_1
3 5wjq 356:659 36 226 P:D · DNA:A,B 47.1% / 61.8% 68 View · PDB TFS_sp_Q5EBL2_ZN628_HUMAN:36:226_5wjq_D_1
5 8sss 356:659 36 224 P:A · DNA:B,C 38.5% / 52.6% 95 View · PDB TFS_sp_Q5EBL2_ZN628_HUMAN:36:224_8sss_A_1
Region 240-3145 models
Actions
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:240:314_5v3m_C_1 5v3m 240-314 View model · PDB
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:240:314_5wjq_D_1 5wjq 240-314 View model · PDB
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:290:314_5egb_A_1 5egb 290-314 View model · PDB
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:290:314_5eh2_F_1 5eh2 290-314 View model · PDB
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:290:314_5ei9_E_1 5ei9 290-314 View model · PDB
Region 358-6443 models · 3 summary rows
Actions
Predicted = Low DIMER_sp_Q5EBL2_ZN628_HUMAN:592:640_1llm_D_1 1llm 592-640 View model · PDB
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:358:644_5v3j_E_1 5v3j 358-644 View model · PDB
Predicted = Low TFS_sp_Q5EBL2_ZN628_HUMAN:358:644_5v3m_C_1 5v3m 358-644 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 356:659 592,592 640,640 P:C,D · DNA:A,B 44.9% / 65.3% 56,57 View · PDB DIMER_sp_Q5EBL2_ZN628_HUMAN:592:640_1llm_D_1
1 5v3m 356:659 358 644 P:C · DNA:A,B 39.0% / 53.7% 98 View · PDB TFS_sp_Q5EBL2_ZN628_HUMAN:358:644_5v3m_C_1
2 5v3j 356:659 358 644 P:E · DNA:A,B 39.0% / 53.7% 98 View · PDB TFS_sp_Q5EBL2_ZN628_HUMAN:358:644_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
36-58PF00096Zinc finger, C2H2 typeoverlaps 36-226
64-86PF00096Zinc finger, C2H2 typeoverlaps 36-226
92-114PF00096Zinc finger, C2H2 typeoverlaps 36-226
148-170PF00096Zinc finger, C2H2 typeoverlaps 36-226
176-198PF00096Zinc finger, C2H2 typeoverlaps 36-226
204-226PF00096Zinc finger, C2H2 typeoverlaps 36-226
454-476PF00096Zinc finger, C2H2 typeoverlaps 358-644
482-504PF00096Zinc finger, C2H2 typeoverlaps 358-644
538-560PF00096Zinc finger, C2H2 typeoverlaps 358-644
566-588PF00096Zinc finger, C2H2 typeoverlaps 358-644
594-616PF00096Zinc finger, C2H2 typeoverlaps 358-644
622-644PF00096Zinc finger, C2H2 typeoverlaps 358-644