ModCRE DB

Transcription factor

Q5EBM4 - ZNF542P

Putative zinc finger protein 542 (Zinc finger protein 542 pseudogene)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 170 aa

85 Generated PWM 7 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)79
MotifPredictionSourceDNA bindingSupportLogoActions
M07625_2.00 NN 70-40% CisBP TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 61.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 56.9% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 56.9% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 56.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 56.0% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 54.9% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 54.9% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 54.9% identity Open · Scan
M03702_2.00 NN 70-40% CisBP GACCCCCCACGACGC 54.2% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 54.2% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 54.2% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 54.2% identity Open · Scan
M06084_2.00 NN 70-40% CisBP AGACCACCCAC 53.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.7% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 53.7% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 53.5% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 53.5% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 53.5% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 53.5% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 53.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.8% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 52.8% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 52.8% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 52.8% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 52.8% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 52.8% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 52.8% identity Open · Scan
MA1652.1 NN 70-40% JASPAR GGAGGAGGTGAGAA 52.8% identity Open · Scan
M01444_2.00 NN 70-40% CisBP CACTGCCAC 52.5% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 52.1% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 52.1% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 52.1% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 52.1% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 52.1% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 52.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 52.1% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 52.1% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 51.4% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 51.4% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.4% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 51.4% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 51.4% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 51.4% identity Open · Scan
M07631_2.00 NN 70-40% CisBP AATTTCAAAAATGCTATGGGC 51.4% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 51.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.4% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 51.4% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 51.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 51.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 51.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.9% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 50.7% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 50.7% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.7% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 50.7% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.7% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 50.7% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 50.7% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.7% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 50.7% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 50.7% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.7% identity Open · Scan
M00785_2.00 NN 70-40% CisBP TTCACTTCCT 50.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 50.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.0% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 50.0% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 50.0% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 50.0% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 50.0% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 50.0% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.0% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 50.0% identity Open · Scan
M08903_2.00 NN 70-40% CisBP ATTCCATTCTATTCCATTCT 50.0% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 50.0% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q5EBM4_ZN542_HUMAN:100:148_5yj3_C_1 ModCRE Homology model TATCC Region 100-148 · 1 3D model Open · Scan
TFS_sp_Q5EBM4_ZN542_HUMAN:100:169_2i13_A_1 ModCRE Homology model GACCCCCCAGGGGGCC Region 100-169 · 1 3D model Open · Scan
TFS_sp_Q5EBM4_ZN542_HUMAN:100:170_5v3j_E_1 ModCRE Homology model AACCCCCTGCTA Region 100-170 · 1 3D model Open · Scan
TFS_sp_Q5EBM4_ZN542_HUMAN:100:170_5v3m_C_1 ModCRE Homology model ATTTTGGCCCGCC Region 100-170 · 1 3D model Open · Scan
TFS_sp_Q5EBM4_ZN542_HUMAN:100:170_5wjq_D_1 ModCRE Homology model ATTTTTTGGCCCC Region 100-170 · 1 3D model Open · Scan
TFS_sp_Q5EBM4_ZN542_HUMAN:99:169_5ei9_E_1 ModCRE Homology model ACATTGTGAGACCTGTT Region 99-169 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 170 aa
99-170

Region 99-170 6 PWM

Residues
72 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 5YJ3
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
7 active PDB models 6 summary rows
Region 99-1707 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q5EBM4_ZN542_HUMAN:127:163_1llm_C_1 1llm 127-163 View model · PDB
Predicted = Low TFS_sp_Q5EBM4_ZN542_HUMAN:100:148_5yj3_C_1 5yj3 100-148 View model · PDB
Predicted = Low TFS_sp_Q5EBM4_ZN542_HUMAN:100:169_2i13_A_1 2i13 100-169 View model · PDB
Predicted = Low TFS_sp_Q5EBM4_ZN542_HUMAN:100:170_5v3j_E_1 5v3j 100-170 View model · PDB
Predicted = Low TFS_sp_Q5EBM4_ZN542_HUMAN:100:170_5v3m_C_1 5v3m 100-170 View model · PDB
Predicted = Low TFS_sp_Q5EBM4_ZN542_HUMAN:100:170_5wjq_D_1 5wjq 100-170 View model · PDB
Predicted = Low TFS_sp_Q5EBM4_ZN542_HUMAN:99:169_5ei9_E_1 5ei9 99-169 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5v3m 98:170 100 170 P:C · DNA:A,B 53.5% / 69.0% 25 View · PDB TFS_sp_Q5EBM4_ZN542_HUMAN:100:170_5v3m_C_1
2 5v3j 98:170 100 170 P:E · DNA:A,B 53.5% / 69.0% 25 View · PDB TFS_sp_Q5EBM4_ZN542_HUMAN:100:170_5v3j_E_1
3 5wjq 98:170 100 170 P:D · DNA:A,B 53.5% / 69.0% 25 View · PDB TFS_sp_Q5EBM4_ZN542_HUMAN:100:170_5wjq_D_1
4 2i13 98:170 100 169 P:A · DNA:C,D 50.0% / 67.1% 46 View · PDB TFS_sp_Q5EBM4_ZN542_HUMAN:100:169_2i13_A_1
5 5ei9 98:170 99 169 P:E · DNA:A,B 45.1% / 63.4% 63 View · PDB TFS_sp_Q5EBM4_ZN542_HUMAN:99:169_5ei9_E_1
1 1llm 98:170 127,127 163,163 P:C,D · DNA:A,B 43.2% / 59.5% 42,43 View · PDB DIMER_sp_Q5EBM4_ZN542_HUMAN:127:163_1llm_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
127-148PF00096Zinc finger, C2H2 typeoverlaps 99-170