ModCRE DB

Transcription factor

Q5JNZ3 - ZNF311

Zinc finger protein 311 (Zinc finger protein zfp-31)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 666 aa

54 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07734_2.00 Known CisBP GCAGCTGCAGCCGCTGCCGCG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)48
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 60.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 59.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 59.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 59.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 58.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 58.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 57.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 57.3% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 55.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.5% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.4% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 54.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.0% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 54.0% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 53.7% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 53.3% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 53.3% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 53.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.7% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 52.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.4% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 52.2% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 52.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 51.7% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 51.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.9% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.3% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.1% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q5JNZ3_ZN311_HUMAN:608:631_2i13_A_1 ModCRE Homology model TAAAGCAGGGGAA Region 608-631 · 1 3D model Open · Scan
TFS_sp_Q5JNZ3_ZN311_HUMAN:608:631_5egb_A_1 ModCRE Homology model TTGGCAGTACTC Region 608-631 · 1 3D model Open · Scan
TFS_sp_Q5JNZ3_ZN311_HUMAN:608:631_5eh2_F_1 ModCRE Homology model CGGGGGGCCAAG Region 608-631 · 1 3D model Open · Scan
TFS_sp_Q5JNZ3_ZN311_HUMAN:608:631_5ei9_E_1 ModCRE Homology model AGGGGGGCCAAG Region 608-631 · 1 3D model Open · Scan
TFS_sp_Q5JNZ3_ZN311_HUMAN:608:632_2kmk_A_1 ModCRE Homology model GGGGGAGGGCCG Region 608-632 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 666 aa
248-606
608-632

Region 248-606 0 PWM

Residues
359 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models

Region 608-632 5 PWM

Residues
25 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
5 active PDBs
Templates
2I13, 2KMK, 5EGB, 5EH2, 5EI9
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 248-6066 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q5JNZ3_ZN311_HUMAN:385:436_1llm_D_1 1llm 385-436 View model · PDB
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:248:545_7w1m_H_1 7w1m 248-545 View model · PDB
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:272:550_5wjq_D_1 5wjq 272-550 View model · PDB
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:330:606_5v3j_E_1 5v3j 330-606 View model · PDB
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:330:606_5v3m_C_1 5v3m 330-606 View model · PDB
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:424:577_2i13_A_1 2i13 424-577 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 245:634 424 577 P:A · DNA:C,D 56.5% / 68.2% 100 View · PDB TFS_sp_Q5JNZ3_ZN311_HUMAN:424:577_2i13_A_1
1 5wjq 245:634 272 550 P:D · DNA:A,B 50.5% / 69.9% 99 View · PDB TFS_sp_Q5JNZ3_ZN311_HUMAN:272:550_5wjq_D_1
1 1llm 245:634 385,385 436,436 P:C,D · DNA:A,B 50.0% / 67.3% 59,61 View · PDB DIMER_sp_Q5JNZ3_ZN311_HUMAN:385:436_1llm_D_1
2 5v3m 245:634 330 606 P:C · DNA:A,B 49.5% / 67.9% 100 View · PDB TFS_sp_Q5JNZ3_ZN311_HUMAN:330:606_5v3m_C_1
3 5v3j 245:634 330 606 P:E · DNA:A,B 49.5% / 67.9% 100 View · PDB TFS_sp_Q5JNZ3_ZN311_HUMAN:330:606_5v3j_E_1
5 7w1m 245:634 248 545 P:H · DNA:F,G 35.8% / 52.1% 92 View · PDB TFS_sp_Q5JNZ3_ZN311_HUMAN:248:545_7w1m_H_1
Region 608-6325 models
Actions
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:608:631_2i13_A_1 2i13 608-631 View model · PDB
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:608:631_5egb_A_1 5egb 608-631 View model · PDB
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:608:631_5eh2_F_1 5eh2 608-631 View model · PDB
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:608:631_5ei9_E_1 5ei9 608-631 View model · PDB
Predicted = Low TFS_sp_Q5JNZ3_ZN311_HUMAN:608:632_2kmk_A_1 2kmk 608-632 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
63-104PF01352KRAB boxNo overlap with loaded model regions
275-297PF00096Zinc finger, C2H2 typeoverlaps 248-606
303-325PF00096Zinc finger, C2H2 typeoverlaps 248-606
331-353PF00096Zinc finger, C2H2 typeoverlaps 248-606
387-409PF00096Zinc finger, C2H2 typeoverlaps 248-606
415-437PF00096Zinc finger, C2H2 typeoverlaps 248-606
445-465PF00096Zinc finger, C2H2 typeoverlaps 248-606
499-521PF00096Zinc finger, C2H2 typeoverlaps 248-606
527-549PF00096Zinc finger, C2H2 typeoverlaps 248-606
583-605PF13912C2H2-type zinc fingeroverlaps 248-606
611-634PF00096Zinc finger, C2H2 typeoverlaps 608-632