Region 58-101 2 PWM
- Residues
- 44 aa
- Domains
- PF00010 · Helix-loop-helix DNA-binding domain
- 3D models
- 3 active PDBs · 3 summary rows
- Templates
- 1NLW, 5GNJ
- Sources
- Predicted = Low
Transcription factor
Q5JUK2 - SOHLH1
Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 1
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 328 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q5JUK2_SOLH1_HUMAN:58:101_5gnj_G_1 | ModCRE | Homology model | AACCCACCGTGGT | Region 58-101 · 1 3D model | Open · Scan | |
| TFS_sp_Q5JUK2_SOLH1_HUMAN:62:81_1nlw_A_1 | ModCRE | Homology model | GCGGGGGGCCCCCGGGGG | Region 62-81 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
328 aa
58-101
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
3 active PDB models
3 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 58-1013 models · 3 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_sp_Q5JUK2_SOLH1_HUMAN:58:101_5gnj_G_1 | 5gnj | 58-101 | View model · PDB |
| Predicted = Low | TFS_sp_Q5JUK2_SOLH1_HUMAN:58:101_5gnj_G_1 | 5gnj | 58-101 | View model · PDB |
| Predicted = Low | TFS_sp_Q5JUK2_SOLH1_HUMAN:62:81_1nlw_A_1 | 1nlw | 62-81 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 2 | 1nlw | 58:101 | 62 | 81 | P:A · DNA:F,G | 45.0% / 70.0% | 25 | View · PDB TFS_sp_Q5JUK2_SOLH1_HUMAN:62:81_1nlw_A_1 |
| 1 | 5gnj | 58:101 | 58,58 | 101,101 | P:G,I · DNA:K,L | 29.5% / 63.6% | 57,56 | View · PDB DIMER_sp_Q5JUK2_SOLH1_HUMAN:58:101_5gnj_G_1 |
| 1 | 5gnj | 58:101 | 58,58 | 101,101 | P:G,I · DNA:K,L | 29.5% / 63.6% | 57,56 | View · PDB TFS_sp_Q5JUK2_SOLH1_HUMAN:58:101_5gnj_G_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 60-102 | PF00010 | Helix-loop-helix DNA-binding domain | overlaps 58-101 |