ModCRE DB

Transcription factor

Q5SQQ9 - VAX1

Ventral anterior homeobox 1

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 334 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
MA0722.1 Known JASPAR CTAATTAC Direct PWM Open · Scan
MA0722.2 Known JASPAR CTAATTA Direct PWM Open · Scan
M03168_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
M05182_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
M05183_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 334 aa
101-156

Region 101-156 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
2HDD
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 101-1561 model
Actions
Predicted = Low DIMER_Q5SQQ9:101:156_2hdd_B_1 2hdd 101-156 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
101-157PF00046Homeodomainoverlaps 101-156