ModCRE DB

Transcription factor

Q5SXM1 - ZNF678

Zinc finger protein 678

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 525 aa

143 Generated PWM 16 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)133
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 69.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 64.7% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 64.3% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 63.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.3% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 62.8% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 62.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 62.4% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 62.3% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 62.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 61.7% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 61.6% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 60.9% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 60.6% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 60.4% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 60.4% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 60.2% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 59.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 59.5% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 59.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.2% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 59.2% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 59.1% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 59.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 58.6% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 58.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 58.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 58.3% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 57.9% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 57.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.5% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 57.4% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.3% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 57.3% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 57.2% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.9% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 56.9% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 56.9% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 56.8% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 56.8% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.8% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 56.6% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 56.5% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 56.3% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 56.3% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 56.2% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 56.0% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 56.0% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.7% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 55.5% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 55.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.4% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 55.3% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 55.2% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 55.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.9% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.7% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 54.6% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 54.5% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 54.3% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.1% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 54.0% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.8% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.8% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 53.6% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 53.3% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 53.2% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 53.2% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 53.2% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 53.1% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.9% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 52.9% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.8% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 52.8% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 52.7% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.7% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 52.6% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 52.6% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 52.6% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.6% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 52.6% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 52.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.5% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 52.1% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 52.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.0% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 51.8% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.8% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.8% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 51.7% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 51.7% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 51.7% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 51.7% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.5% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 51.5% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 51.4% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.3% identity Open · Scan
MA1516.1 NN 70-40% JASPAR GACCACGCCCA 51.3% identity Open · Scan
M00143_2.00 NN 70-40% CisBP CCCCCCCACG 51.2% identity Open · Scan
M00765_2.00 NN 70-40% CisBP CCCGCCCCC 51.2% identity Open · Scan
M04430_2.00 NN 70-40% CisBP GACCACGCCCA 51.2% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 51.2% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 51.2% identity Open · Scan
MA0079.1 NN 70-40% JASPAR GGGGCGGGGT 51.2% identity Open · Scan
MA0742.1 NN 70-40% JASPAR GACCACGCCCTTATT 51.2% identity Open · Scan
MA0753.1 NN 70-40% JASPAR CCCCCCCCAC 51.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.2% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 51.0% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 51.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.9% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 50.8% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 50.7% identity Open · Scan
M08914_2.00 NN 70-40% CisBP ATTTAGTCCATTTACATTTAATGT 50.6% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 50.5% identity Open · Scan
M03686_2.00 NN 70-40% CisBP TGATTGCTCTTTT 50.3% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.3% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 50.1% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.1% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 50.0% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 50.0% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.0% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.0% identity Open · Scan
MA0747.1 NN 70-40% JASPAR GCCACGCCCACT 50.0% identity Open · Scan
MA1564.1 NN 70-40% JASPAR GCCACGCCCCCC 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q5SXM1_ZN678_HUMAN:102:175_1a1g_A_1 ModCRE Homology model GAGGGGGGGG Region 102-175 · 1 3D model Open · Scan
TFS_sp_Q5SXM1_ZN678_HUMAN:102:175_5keb_A_1 ModCRE Homology model GAGGGGGGGG Region 102-175 · 1 3D model Open · Scan
TFS_sp_Q5SXM1_ZN678_HUMAN:122:175_4gzn_C_1 ModCRE Homology model ACGGGGAGGT Region 122-175 · 1 3D model Open · Scan
TFS_sp_Q5SXM1_ZN678_HUMAN:122:175_4m9v_C_1 ModCRE Homology model ACGAGTGGAA Region 122-175 · 1 3D model Open · Scan
TFS_sp_Q5SXM1_ZN678_HUMAN:88:176_2i13_A_1 ModCRE Homology model AGTTGCCACCCTCTGAAA Region 88-176 · 1 3D model Open · Scan
TFS_sp_Q5SXM1_ZN678_HUMAN:88:176_5eh2_F_1 ModCRE Homology model CCGGGGACCGCGGGGGGA Region 88-176 · 1 3D model Open · Scan
TFS_sp_Q5SXM1_ZN678_HUMAN:88:176_5v3j_E_1 ModCRE Homology model AATCCTCACTCTTACCA Region 88-176 · 1 3D model Open · Scan
TFS_sp_Q5SXM1_ZN678_HUMAN:88:176_5v3m_C_1 ModCRE Homology model CCGGAGGGGGGGGGGGG Region 88-176 · 1 3D model Open · Scan
TFS_sp_Q5SXM1_ZN678_HUMAN:92:176_5wjq_D_1 ModCRE Homology model ATAATAATCTGGGGGC Region 92-176 · 1 3D model Open · Scan
TFS_sp_Q5SXM1_ZN678_HUMAN:97:176_2kmk_A_1 ModCRE Homology model GGAAAGGGGGGGGAAT Region 97-176 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 525 aa
88-176
178-484

Region 88-176 10 PWM

Residues
89 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
10 active PDBs
Templates
1A1G, 2I13, 2KMK, 4GZN, 4M9V, 5EH2, 5KEB, 5V3J, ...
Sources
Predicted = Low

Region 178-484 0 PWM

Residues
307 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
16 active PDB models 6 summary rows
Region 88-17610 models
Actions
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:102:175_1a1g_A_1 1a1g 102-175 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:102:175_5keb_A_1 5keb 102-175 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:122:175_4gzn_C_1 4gzn 122-175 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:122:175_4m9v_C_1 4m9v 122-175 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:88:176_2i13_A_1 2i13 88-176 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:88:176_5eh2_F_1 5eh2 88-176 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:88:176_5v3j_E_1 5v3j 88-176 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:88:176_5v3m_C_1 5v3m 88-176 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:92:176_5wjq_D_1 5wjq 92-176 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:97:176_2kmk_A_1 2kmk 97-176 View model · PDB
Region 178-4846 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q5SXM1_ZN678_HUMAN:319:370_1llm_D_1 1llm 319-370 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:178:456_5wjq_D_1 5wjq 178-456 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:181:479_7w1m_H_1 7w1m 181-479 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:208:484_5v3j_E_1 5v3j 208-484 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:208:484_5v3m_C_1 5v3m 208-484 View model · PDB
Predicted = Low TFS_sp_Q5SXM1_ZN678_HUMAN:246:399_2i13_A_1 2i13 246-399 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 177:494 246 399 P:A · DNA:C,D 58.4% / 76.6% 100 View · PDB TFS_sp_Q5SXM1_ZN678_HUMAN:246:399_2i13_A_1
1 5wjq 177:494 178 456 P:D · DNA:A,B 54.8% / 75.6% 99 View · PDB TFS_sp_Q5SXM1_ZN678_HUMAN:178:456_5wjq_D_1
2 5v3m 177:494 208 484 P:C · DNA:A,B 53.8% / 73.6% 100 View · PDB TFS_sp_Q5SXM1_ZN678_HUMAN:208:484_5v3m_C_1
3 5v3j 177:494 208 484 P:E · DNA:A,B 53.8% / 73.6% 100 View · PDB TFS_sp_Q5SXM1_ZN678_HUMAN:208:484_5v3j_E_1
1 1llm 177:494 319,319 370,370 P:C,D · DNA:A,B 46.2% / 65.4% 59,61 View · PDB DIMER_sp_Q5SXM1_ZN678_HUMAN:319:370_1llm_D_1
5 7w1m 177:494 181 479 P:H · DNA:F,G 37.0% / 51.3% 92 View · PDB TFS_sp_Q5SXM1_ZN678_HUMAN:181:479_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
125-147PF00096Zinc finger, C2H2 typeoverlaps 88-176
153-175PF00096Zinc finger, C2H2 typeoverlaps 88-176
181-203PF00096Zinc finger, C2H2 typeoverlaps 178-484
209-231PF00096Zinc finger, C2H2 typeoverlaps 178-484
237-259PF13912C2H2-type zinc fingeroverlaps 178-484
265-287PF00096Zinc finger, C2H2 typeoverlaps 178-484
307-332PF13465Zinc-finger double domainoverlaps 178-484
363-387PF13465Zinc-finger double domainoverlaps 178-484
405-427PF00096Zinc finger, C2H2 typeoverlaps 178-484
433-455PF00096Zinc finger, C2H2 typeoverlaps 178-484
461-483PF00096Zinc finger, C2H2 typeoverlaps 178-484