Region 81-513 5 PWM
- Residues
- 433 aa
- Domains
- PF13921 · Myb-like DNA-binding domain PF13921 · Myb-like DNA-binding domain
- 3D models
- 10 active PDBs · 5 summary rows
- Templates
- 1H88, 1H89, 1H8A, 2KDZ, 5EYB, 7XUR, 7ZWC, 7ZXE, ...
- Sources
- Predicted = Low
Transcription factor
Q5SXM2 - SNAPC4
snRNA-activating protein complex subunit 4 (SNAPc subunit 4) (Proximal sequence element-binding transcription factor subunit alpha) (PSE-binding factor subunit alpha) (PTF subunit alpha) (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1469 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q5SXM2_SNPC4_HUMAN:257:324_2kdz_A_1 | ModCRE | Homology model | GGAAATATTTTTTAAT | Region 257-324 · 1 3D model | Open · Scan | |
| TFS_sp_Q5SXM2_SNPC4_HUMAN:262:340_1h88_C_1 | ModCRE | Homology model | CTTCTGGGGGGACTT | Region 262-340 · 1 3D model | Open · Scan | |
| TFS_sp_Q5SXM2_SNPC4_HUMAN:275:324_5eyb_A_1 | ModCRE | Homology model | TTCAAGGACCCCCTG | Region 275-324 · 1 3D model | Open · Scan | |
| TFS_sp_Q5SXM2_SNPC4_HUMAN:284:340_1h89_C_1 | ModCRE | Homology model | GATTTTACGGGCCCC | Region 284-340 · 1 3D model | Open · Scan | |
| TFS_sp_Q5SXM2_SNPC4_HUMAN:289:340_1h8a_C_1 | ModCRE | Homology model | GGCCCAACCTCCCTT | Region 289-340 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
1469 aa
81-513
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 81-51310 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:144:502_7xur_A_1 | 7xur | 144-502 | View model · PDB |
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:149:513_8iue_4_1 | 8iue | 149-513 | View model · PDB |
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:149:513_8iuh_4_1 | 8iuh | 149-513 | View model · PDB |
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:257:324_2kdz_A_1 | 2kdz | 257-324 | View model · PDB |
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:262:340_1h88_C_1 | 1h88 | 262-340 | View model · PDB |
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:275:324_5eyb_A_1 | 5eyb | 275-324 | View model · PDB |
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:284:340_1h89_C_1 | 1h89 | 284-340 | View model · PDB |
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:289:340_1h8a_C_1 | 1h8a | 289-340 | View model · PDB |
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:81:398_7zwc_c_1 | 7zwc | 81-398 | View model · PDB |
| Predicted = Low | TFS_sp_Q5SXM2_SNPC4_HUMAN:81:398_7zxe_c_1 | 7zxe | 81-398 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 8iuh | 81:513 | 149 | 513 | P:4 · DNA:X,Y | 100.0% / 100.0% | 99 | View · PDB TFS_sp_Q5SXM2_SNPC4_HUMAN:149:513_8iuh_4_1 |
| 2 | 8iue | 81:513 | 149 | 513 | P:4 · DNA:X,Y | 100.0% / 100.0% | 99 | View · PDB TFS_sp_Q5SXM2_SNPC4_HUMAN:149:513_8iue_4_1 |
| 3 | 7zxe | 81:513 | 81 | 398 | P:c · DNA:N,T | 95.3% / 95.3% | 100 | View · PDB TFS_sp_Q5SXM2_SNPC4_HUMAN:81:398_7zxe_c_1 |
| 4 | 7zwc | 81:513 | 81 | 398 | P:c · DNA:N,T | 95.3% / 95.3% | 100 | View · PDB TFS_sp_Q5SXM2_SNPC4_HUMAN:81:398_7zwc_c_1 |
| 5 | 7xur | 81:513 | 144 | 502 | P:A · DNA:X,Y | 85.5% / 85.5% | 100 | View · PDB TFS_sp_Q5SXM2_SNPC4_HUMAN:144:502_7xur_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 297-357 | PF13921 | Myb-like DNA-binding domain | overlaps 81-513 |
| 404-464 | PF13921 | Myb-like DNA-binding domain | overlaps 81-513 |