ModCRE DB

Transcription factor

Q5SZP1 - PAX2

Paired box 2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 409 aa

22 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)11
MotifPredictionSourceDNA bindingSupportLogoActions
M02690_2.00 NN 70+% CisBP AGTCACGC 95.6% identity Open · Scan
M03294_2.00 NN 70+% CisBP CGTCACGCTTGACTGCTC 94.1% identity Open · Scan
MA0067.1 NN 70+% JASPAR AGTCACGC 92.8% identity Open · Scan
M02425_2.00 NN 70+% CisBP CAGTCAAGCG 86.2% identity Open · Scan
M02426_2.00 NN 70+% CisBP ACCGTGACCAC 75.3% identity Open · Scan
M03945_2.00 NN 70+% CisBP GTCATGCGTGACG 74.4% identity Open · Scan
MA0781.1 NN 70+% JASPAR CGTCACGCATGACTGCA 72.5% identity Open · Scan
MA0014.1 NN 70+% JASPAR AGAGCACTGAAGCGTAACCG 72.4% identity Open · Scan
MA0014.2 NN 70+% JASPAR GAGGGCAGCCAAGCGTGAC 72.4% identity Open · Scan
M03947_2.00 NN 70+% CisBP AGCGTGACGGTTCCGCT 71.8% identity Open · Scan
M09622_2.00 NN 70+% CisBP GCAGCCAAGCGTGACC 71.8% identity Open · Scan
Nearest Neighbor (70% - 40%)11
MotifPredictionSourceDNA bindingSupportLogoActions
MA0779.1 NN 70-40% JASPAR CGTCACGCATGACTGCA 69.2% identity Open · Scan
MA0068.2 NN 70-40% JASPAR CTAATTAG 65.8% identity Open · Scan
M05685_2.00 NN 70-40% CisBP GGCGCAGTCATGCGTGACGG 65.2% identity Open · Scan
MA0068.1 NN 70-40% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 65.2% identity Open · Scan
M00349_2.00 NN 70-40% CisBP CTAATTAGC 58.8% identity Open · Scan
MA1481.1 NN 70-40% JASPAR CTAATTAC 54.0% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 53.7% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 53.2% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 51.9% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 51.4% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 409 aa
232-258

Region 232-258 0 PWM

Residues
27 aa
Domains
No overlapping PFAM annotation recorded
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 232-2581 model
Actions
Predicted = Low DIMER_Q5SZP1:232:258_1fjl_B_1 1fjl 232-258 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
16-140PF00292'Paired box' domainNo overlap with loaded model regions
285-372PF12403Paired-box protein 2 C terminalNo overlap with loaded model regions