ModCRE DB

Transcription factor

Q5T619 - ZNF648

Zinc finger protein 648

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 568 aa

24 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)17
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 52.9% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 52.9% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 52.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 52.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 52.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 51.7% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 51.7% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.5% identity Open · Scan
M03702_2.00 NN 70-40% CisBP GACCCCCCACGACGC 50.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 50.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 50.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 50.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 50.5% identity Open · Scan
MA0740.1 NN 70-40% JASPAR GGCCACGCCCCCTT 50.5% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.0% identity Open · Scan
ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q5T619_ZN648_HUMAN:274:554_5wjq_D_1 ModCRE Homology model GTGCCCGGGGGGGGGGGGGGGCCCCCCC Region 274-554 · 1 3D model Open · Scan
TFS_sp_Q5T619_ZN648_HUMAN:279:554_5v3j_E_1 ModCRE Homology model AAGGGACCCCGGGGGGGGTGCGTGGT Region 279-554 · 1 3D model Open · Scan
TFS_sp_Q5T619_ZN648_HUMAN:279:554_5v3m_C_1 ModCRE Homology model CCTGGGTGGGGGGGGGGGGGGGGGCG Region 279-554 · 1 3D model Open · Scan
TFS_sp_Q5T619_ZN648_HUMAN:344:498_2i13_A_1 ModCRE Homology model CTGGCTTAGTATAGTGCTAGC Region 344-498 · 1 3D model Open · Scan
TFS_sp_Q5T619_ZN648_HUMAN:445:554_5egb_A_1 ModCRE Homology model ACGGGGGCCCCCGGGGGG Region 445-554 · 1 3D model Open · Scan
TFS_sp_Q5T619_ZN648_HUMAN:445:554_5ei9_E_1 ModCRE Homology model CCGGGGGGGGCCCGGCT Region 445-554 · 1 3D model Open · Scan
TFS_sp_Q5T619_ZN648_HUMAN:447:554_5eh2_F_1 ModCRE Homology model CCGGGGGGGGCCCGCCCTA Region 447-554 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 568 aa
274-554

Region 274-554 7 PWM

Residues
281 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
9 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, 5WJQ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models 6 summary rows
Region 274-5549 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q5T619_ZN648_HUMAN:305:358_1llm_D_1 1llm 305-358 View model · PDB
Predicted = Low TFS_sp_Q5T619_ZN648_HUMAN:274:554_5wjq_D_1 5wjq 274-554 View model · PDB
Predicted = Low TFS_sp_Q5T619_ZN648_HUMAN:279:550_7w1m_H_1 7w1m 279-550 View model · PDB
Predicted = Low TFS_sp_Q5T619_ZN648_HUMAN:279:554_5v3j_E_1 5v3j 279-554 View model · PDB
Predicted = Low TFS_sp_Q5T619_ZN648_HUMAN:279:554_5v3m_C_1 5v3m 279-554 View model · PDB
Predicted = Low TFS_sp_Q5T619_ZN648_HUMAN:344:498_2i13_A_1 2i13 344-498 View model · PDB
Predicted = Low TFS_sp_Q5T619_ZN648_HUMAN:445:554_5egb_A_1 5egb 445-554 View model · PDB
Predicted = Low TFS_sp_Q5T619_ZN648_HUMAN:445:554_5ei9_E_1 5ei9 445-554 View model · PDB
Predicted = Low TFS_sp_Q5T619_ZN648_HUMAN:447:554_5eh2_F_1 5eh2 447-554 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 2i13 274:555 344 498 P:A · DNA:C,D 46.5% / 66.5% 100 View · PDB TFS_sp_Q5T619_ZN648_HUMAN:344:498_2i13_A_1
1 5v3m 274:555 279 554 P:C · DNA:A,B 44.6% / 64.1% 99 View · PDB TFS_sp_Q5T619_ZN648_HUMAN:279:554_5v3m_C_1
2 5v3j 274:555 279 554 P:E · DNA:A,B 44.6% / 64.1% 99 View · PDB TFS_sp_Q5T619_ZN648_HUMAN:279:554_5v3j_E_1
3 5wjq 274:555 274 554 P:D · DNA:A,B 42.7% / 61.2% 99 View · PDB TFS_sp_Q5T619_ZN648_HUMAN:274:554_5wjq_D_1
1 1llm 274:555 305,305 358,358 P:C,D · DNA:A,B 42.6% / 63.0% 62,63 View · PDB DIMER_sp_Q5T619_ZN648_HUMAN:305:358_1llm_D_1
4 7w1m 274:555 279 550 P:H · DNA:F,G 36.2% / 48.9% 84 View · PDB TFS_sp_Q5T619_ZN648_HUMAN:279:550_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
279-301PF00096Zinc finger, C2H2 typeoverlaps 274-554
335-358PF00096Zinc finger, C2H2 typeoverlaps 274-554
364-386PF00096Zinc finger, C2H2 typeoverlaps 274-554
420-442PF00096Zinc finger, C2H2 typeoverlaps 274-554
448-470PF00096Zinc finger, C2H2 typeoverlaps 274-554
476-498PF00096Zinc finger, C2H2 typeoverlaps 274-554
504-526PF00096Zinc finger, C2H2 typeoverlaps 274-554
532-554PF00096Zinc finger, C2H2 typeoverlaps 274-554