ModCRE DB

Transcription factor

Q5U0R0

Neurogenic differentiation factor

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 382 aa

29 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0668.1 NN 70+% JASPAR GCCATATGGT 99.7% identity Open · Scan
MA0623.1 NN 70+% JASPAR ACCATATGGT 70.1% identity Open · Scan
MA0623.2 NN 70+% JASPAR GACATATGTC 70.1% identity Open · Scan
Nearest Neighbor (70% - 40%)26
MotifPredictionSourceDNA bindingSupportLogoActions
MA0669.1 NN 70-40% JASPAR AACATATGTC 69.4% identity Open · Scan
M05980_2.00 NN 70-40% CisBP CACAGCTGAC 60.6% identity Open · Scan
MA1472.1 NN 70-40% JASPAR AACAGCTGTT 58.4% identity Open · Scan
M05967_2.00 NN 70-40% CisBP TGACATATGG 58.3% identity Open · Scan
MA1109.1 NN 70-40% JASPAR GGACAGATGGCAG 57.7% identity Open · Scan
MA0607.1 NN 70-40% JASPAR CCATATGT 56.6% identity Open · Scan
M01729_2.00 NN 70-40% CisBP AACATATGGT 56.0% identity Open · Scan
MA0818.1 NN 70-40% JASPAR ACCATATGTT 56.0% identity Open · Scan
MA0827.1 NN 70-40% JASPAR ACCATATGTT 55.7% identity Open · Scan
MA0461.1 NN 70-40% JASPAR CAGATGGC 55.2% identity Open · Scan
MA1467.1 NN 70-40% JASPAR AACAGCTGTC 55.2% identity Open · Scan
M05951_2.00 NN 70-40% CisBP ACCACCTGT 54.5% identity Open · Scan
M05986_2.00 NN 70-40% CisBP ACCGCACCATCTGTC 54.4% identity Open · Scan
MA1468.1 NN 70-40% JASPAR AACATATGTC 54.4% identity Open · Scan
M05962_2.00 NN 70-40% CisBP CCACCTGCC 54.3% identity Open · Scan
MA1485.1 NN 70-40% JASPAR GCAACAGCTGTTAC 54.3% identity Open · Scan
M05976_2.00 NN 70-40% CisBP ACCATATGGCG 54.2% identity Open · Scan
M05952_2.00 NN 70-40% CisBP ACCATCTGCCG 53.5% identity Open · Scan
M02784_2.00 NN 70-40% CisBP ACCATATGTT 51.3% identity Open · Scan
MA0817.1 NN 70-40% JASPAR AAACATATGTTT 51.3% identity Open · Scan
M03621_2.00 NN 70-40% CisBP AAAACAGCTGTTTT 50.9% identity Open · Scan
M01718_2.00 NN 70-40% CisBP AACATATGGT 50.0% identity Open · Scan
M06000_2.00 NN 70-40% CisBP CCAGATGGCACGGACACAACA 50.0% identity Open · Scan
MA0633.1 NN 70-40% JASPAR ACCATATGTT 50.0% identity Open · Scan
MA0678.1 NN 70-40% JASPAR ACCATATGGT 50.0% identity Open · Scan
MA1123.1 NN 70-40% JASPAR ATTCCAGATGTTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 382 aa
121-177

Region 121-177 0 PWM

Residues
57 aa
Domains
PF00010 · Helix-loop-helix DNA-binding domain
3D models
1 active PDB
Templates
2YPA
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 121-1771 model
Actions
Predicted = Low DIMER_Q5U0R0:121:177_2ypa_A_1 2ypa 121-177 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
122-172PF00010Helix-loop-helix DNA-binding domainoverlaps 121-177
180-310PF12533Neuronal helix-loop-helix transcription factorNo overlap with loaded model regions