ModCRE DB

Transcription factor

Q5VTD9 - GFI1B

Zinc finger protein Gfi-1b (Growth factor independent protein 1B) (Potential regulator of CDKN1A translocated in CML)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 330 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
M04524_2.00 Known CisBP TAAATCACTGCATTTCACTCA Direct PWM Open · Scan
M00239_2.00 Known CisBP ATAAATCTGGG Direct PWM Open · Scan
M00240_2.00 Known CisBP ATAAATCTGGG Direct PWM Open · Scan
M04523_2.00 Known CisBP TAAATCACTGCACCTCACTCC Direct PWM Open · Scan
M08909_2.00 Known CisBP AAATCACAGC Direct PWM Open · Scan
GFI1B_HUMAN.H11MO.0.A Known HOCOMOCO GCTGTGATTT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 330 aa
150-324

Region 150-324 0 PWM

Residues
175 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 150-3241 model
Actions
Predicted = Low TFS_Q5VTD9:150:324_5v3j_E_1 5v3j 150-324 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
163-186PF00096Zinc finger, C2H2 typeoverlaps 150-324
192-214PF00096Zinc finger, C2H2 typeoverlaps 150-324
220-242PF00096Zinc finger, C2H2 typeoverlaps 150-324
248-270PF00096Zinc finger, C2H2 typeoverlaps 150-324
276-298PF00096Zinc finger, C2H2 typeoverlaps 150-324
304-327PF00096Zinc finger, C2H2 typeoverlaps 150-324