ModCRE DB

Transcription factor

Q6DI00 - HOXA13

Homeobox A13

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 388 aa

52 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0650.1 NN 70+% JASPAR CCAATAAAAA 99.7% identity Open · Scan
Nearest Neighbor (70% - 40%)51
MotifPredictionSourceDNA bindingSupportLogoActions
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 60.3% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 60.3% identity Open · Scan
MA0907.1 NN 70-40% JASPAR GCTCGTAAAAA 60.0% identity Open · Scan
MA0911.1 NN 70-40% JASPAR GGTCGTAAAATT 59.3% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 58.6% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 58.2% identity Open · Scan
M00474_2.00 NN 70-40% CisBP TTTATGACC 57.8% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 57.8% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 57.8% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 57.8% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 57.8% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 57.3% identity Open · Scan
MA0873.1 NN 70-40% JASPAR AGTCGTAAAAA 57.3% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 57.3% identity Open · Scan
M00505_2.00 NN 70-40% CisBP TTTTATGAGC 57.0% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 56.8% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 56.8% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 56.8% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 56.8% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 56.8% identity Open · Scan
MA0909.1 NN 70-40% JASPAR CCAATAAAAA 56.5% identity Open · Scan
MA0901.1 NN 70-40% JASPAR CCAATAAAAC 55.6% identity Open · Scan
M00538_2.00 NN 70-40% CisBP TTTTATGACC 55.5% identity Open · Scan
M06224_2.00 NN 70-40% CisBP ATCATAAAA 55.5% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 55.1% identity Open · Scan
M02081_2.00 NN 70-40% CisBP TTTTATTA 55.0% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 54.3% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 52.7% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 52.7% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 52.6% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 51.8% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 51.8% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 51.8% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 51.8% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 51.8% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 51.7% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 51.5% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 51.4% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 50.9% identity Open · Scan
M09186_2.00 NN 70-40% CisBP ACATAAAT 50.9% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 50.9% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 50.8% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 50.6% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 50.6% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 50.0% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 50.0% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 50.0% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 50.0% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 50.0% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 50.0% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 388 aa
323-379

Region 323-379 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 323-3791 model
Actions
Predicted = Low DIMER_Q6DI00:323:379_5zjr_A_1 5zjr 323-379 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
145-224PF12284Hox protein A13 N terminalNo overlap with loaded model regions
323-379PF00046Homeodomainoverlaps 323-379