ModCRE DB

Transcription factor

Q6FG31 - HOXA5

Homeobox protein Hox-A5

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 270 aa

115 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)19
MotifPredictionSourceDNA bindingSupportLogoActions
MA0158.1 NN 70+% JASPAR CACTAATT 99.6% identity Open · Scan
M00422_2.00 NN 70+% CisBP TTAATGA 79.7% identity Open · Scan
M06248_2.00 NN 70+% CisBP TAATTGCC 78.4% identity Open · Scan
MA1507.1 NN 70+% JASPAR ATCATTAG 77.1% identity Open · Scan
M02166_2.00 NN 70+% CisBP CTAATTAC 76.6% identity Open · Scan
M06227_2.00 NN 70+% CisBP TTAATTAT 75.2% identity Open · Scan
M09206_2.00 NN 70+% CisBP CATTAATCAA 75.0% identity Open · Scan
M06549_2.00 NN 70+% CisBP TTAATGA 74.3% identity Open · Scan
MA1501.1 NN 70+% JASPAR GGTAATTAAC 73.7% identity Open · Scan
M03799_2.00 NN 70+% CisBP GTAATTAC 73.0% identity Open · Scan
M00494_2.00 NN 70+% CisBP TTAATTACC 72.8% identity Open · Scan
MA1497.1 NN 70+% JASPAR GGTAATTAAC 72.8% identity Open · Scan
M06261_2.00 NN 70+% CisBP TTAATTA 72.2% identity Open · Scan
M00476_2.00 NN 70+% CisBP TTAATGGCC 71.9% identity Open · Scan
MA1498.1 NN 70+% JASPAR GCAATTAC 71.9% identity Open · Scan
M00410_2.00 NN 70+% CisBP TTTTATGACC 71.6% identity Open · Scan
MA1503.1 NN 70+% JASPAR GTCGTAAAAT 71.6% identity Open · Scan
M09204_2.00 NN 70+% CisBP TTAATGGC 70.1% identity Open · Scan
MA1499.1 NN 70+% JASPAR ATCATTAG 70.1% identity Open · Scan
Nearest Neighbor (70% - 40%)96
MotifPredictionSourceDNA bindingSupportLogoActions
MA1500.1 NN 70-40% JASPAR TTAATTAC 69.6% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 69.0% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 68.5% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 68.5% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 68.4% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 68.4% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 68.4% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 68.3% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 68.3% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 68.2% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 68.2% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 68.0% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 67.9% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 67.7% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 67.7% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 67.7% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 67.7% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 66.6% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 66.6% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 65.5% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 65.3% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 65.1% identity Open · Scan
MA1504.1 NN 70-40% JASPAR GTCATTAA 65.1% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 64.9% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 64.9% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 63.9% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 63.9% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 63.9% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 63.9% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 63.9% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 62.5% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 62.5% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 62.2% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 62.1% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 62.0% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 62.0% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 61.6% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 61.4% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 61.4% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 61.4% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 61.2% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 60.9% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 60.9% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 60.7% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 60.3% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 60.3% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 60.2% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 60.0% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 59.4% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 59.2% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 59.2% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 59.2% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 58.6% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 57.8% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 57.6% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 56.1% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 55.9% identity Open · Scan
M00492_2.00 NN 70-40% CisBP TAATTAGC 54.9% identity Open · Scan
M09214_2.00 NN 70-40% CisBP GCATTAATCAA 54.9% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 54.4% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 54.3% identity Open · Scan
MA0027.1 NN 70-40% JASPAR AAGTAGTGCCC 54.2% identity Open · Scan
MA0027.2 NN 70-40% JASPAR CTAATTAG 54.2% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 53.7% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 53.7% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 53.6% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 53.6% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 53.6% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 53.5% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 53.4% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 52.8% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 52.6% identity Open · Scan
M01245_2.00 NN 70-40% CisBP TTTTATTACC 52.5% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 52.5% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 52.3% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 52.2% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 52.0% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 51.8% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 51.5% identity Open · Scan
M09186_2.00 NN 70-40% CisBP ACATAAAT 51.1% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 50.8% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 50.8% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 50.8% identity Open · Scan
M03152_2.00 NN 70-40% CisBP TAATTAGCTAATTA 50.8% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 50.8% identity Open · Scan
M09181_2.00 NN 70-40% CisBP TTTAATTGTTTT 50.8% identity Open · Scan
MA0612.1 NN 70-40% JASPAR CCTAATTACC 50.8% identity Open · Scan
MA0875.1 NN 70-40% JASPAR GCAATTAG 50.8% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 50.8% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 50.5% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 50.5% identity Open · Scan
M03815_2.00 NN 70-40% CisBP TTAATTAG 50.0% identity Open · Scan
M06900_2.00 NN 70-40% CisBP TCAATAATTAA 50.0% identity Open · Scan
M06912_2.00 NN 70-40% CisBP TCAATAATTGA 50.0% identity Open · Scan
MA0724.1 NN 70-40% JASPAR ACCGATTAG 50.0% identity Open · Scan
MA0901.1 NN 70-40% JASPAR CCAATAAAAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 270 aa
174-255

Region 174-255 0 PWM

Residues
82 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
2R5Y
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 174-2551 model
Actions
Predicted = Low DIMER_Q6FG31:174:255_2r5y_A_1 2r5y 174-255 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
196-252PF00046Homeodomainoverlaps 174-255