ModCRE DB

Transcription factor

Q6FHY0 - RARB

Retinoic acid receptor beta (Nuclear receptor subfamily 1 group B member 2)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 336 aa

31 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)10
MotifPredictionSourceDNA bindingSupportLogoActions
MA1552.1 NN 70+% JASPAR AAGGTCATGACCTT 99.7% identity Open · Scan
M05563_2.00 NN 70+% CisBP AAAAGGTCAA 99.6% identity Open · Scan
M03424_2.00 NN 70+% CisBP AAAGGTCACCAGAGGTCA 98.5% identity Open · Scan
MA0857.1 NN 70+% JASPAR AAAGGTCAAAAGGTCA 98.5% identity Open · Scan
M03392_2.00 NN 70+% CisBP AAGGTCAACTAAAGGTCA 85.6% identity Open · Scan
MA0859.1 NN 70+% JASPAR AAGGTCAAAAGGTCAA 85.6% identity Open · Scan
MA1553.1 NN 70+% JASPAR AAGGTCATGACCTT 85.6% identity Open · Scan
M09277_2.00 NN 70+% CisBP GGGGGATCAAGAGGTCAAGG 85.4% identity Open · Scan
M03432_2.00 NN 70+% CisBP AAAGGTCAAGAGAGGTCA 81.0% identity Open · Scan
MA0159.1 NN 70+% JASPAR AGGTCACGGAGAGGTCA 80.1% identity Open · Scan
Nearest Neighbor (70% - 40%)21
MotifPredictionSourceDNA bindingSupportLogoActions
M01298_2.00 NN 70-40% CisBP AAAGGTCA 65.7% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 60.6% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 60.5% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 60.5% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 58.5% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 57.1% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 56.0% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 56.0% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 56.0% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 55.8% identity Open · Scan
M02414_2.00 NN 70-40% CisBP TAGTCACAAA 55.5% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 53.6% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 53.4% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 53.4% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 53.4% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 53.4% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 52.7% identity Open · Scan
M00689_2.00 NN 70-40% CisBP AAAGATCAA 52.1% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 51.7% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 51.3% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 51.1% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 336 aa
1-42

Region 1-42 0 PWM

Residues
42 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1DSZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-421 model
Actions
Predicted = Low DIMER_Q6FHY0:1:42_1dsz_A_1 1dsz 1-42 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-36PF00105Double treble clef zinc finger, C4 typeoverlaps 1-42
108-280PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions