ModCRE DB

Transcription factor

Q6I9R7 - RARA

RARA protein (Retinoic acid nuclear receptor alpha variant 1) (Retinoic acid receptor, alpha, isoform CRA_c) (cDNA, FLJ92939, Homo sapiens retinoic acid receptor, alpha (RARA), mRNA)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 462 aa

1 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0159.1 Known JASPAR AGGTCACGGAGAGGTCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 462 aa
82-415

Region 82-415 0 PWM

Residues
334 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type PF00104 · Ligand-binding domain of nuclear hormone receptor
3D models
10 active PDBs
Templates
3DZY, 3E00, 4NQA, 5UAN, 6XWG
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models
Region 82-41510 models
Actions
Predicted = Low DIMER_Q6I9R7:82:161_6xwg_D_1 6xwg 82-161 View model · PDB
Predicted = Low DIMER_Q6I9R7:87:415_5uan_B_1 5uan 87-415 View model · PDB
Predicted = Low DIMER_Q6I9R7:88:414_3dzy_A_1 3dzy 88-414 View model · PDB
Predicted = Low DIMER_Q6I9R7:88:414_3e00_A_1 3e00 88-414 View model · PDB
Predicted = Low DIMER_Q6I9R7:88:415_4nqa_A_1 4nqa 88-415 View model · PDB
Predicted = Low TFS_Q6I9R7:82:161_6xwg_D_1 6xwg 82-161 View model · PDB
Predicted = Low TFS_Q6I9R7:87:415_5uan_B_1 5uan 87-415 View model · PDB
Predicted = Low TFS_Q6I9R7:88:414_3dzy_A_1 3dzy 88-414 View model · PDB
Predicted = Low TFS_Q6I9R7:88:414_3e00_A_1 3e00 88-414 View model · PDB
Predicted = Low TFS_Q6I9R7:88:415_4nqa_A_1 4nqa 88-415 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
87-155PF00105Double treble clef zinc finger, C4 typeoverlaps 82-415
227-399PF00104Ligand-binding domain of nuclear hormone receptoroverlaps 82-415