ModCRE DB

Transcription factor

Q6I9S1 - NR1D2

NR1D2 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 579 aa

45 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M05660_2.00 NN 70+% CisBP GATGTGGGTCAGTGGGTCAG 99.8% identity Open · Scan
MA1532.1 NN 70+% JASPAR GGGTTAGTGGGTCAT 99.6% identity Open · Scan
Nearest Neighbor (70% - 40%)43
MotifPredictionSourceDNA bindingSupportLogoActions
M02392_2.00 NN 70-40% CisBP GAGGTCAA 66.6% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 57.6% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 57.6% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 57.6% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 57.6% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 57.5% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 55.4% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 55.2% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 55.2% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 55.1% identity Open · Scan
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 55.1% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 55.1% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 55.1% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 55.1% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 55.1% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 55.1% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 55.1% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 54.7% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 54.7% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 54.7% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 53.8% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 53.8% identity Open · Scan
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 53.7% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 53.5% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 53.4% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 53.3% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 53.3% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 53.3% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 53.3% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 53.1% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 53.1% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 53.1% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 52.5% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 51.3% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 51.3% identity Open · Scan
M03930_2.00 NN 70-40% CisBP AACTAGAGCAC 51.3% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 51.2% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 51.1% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 51.0% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 50.7% identity Open · Scan
M00686_2.00 NN 70-40% CisBP AGTGATCA 50.6% identity Open · Scan
M02389_2.00 NN 70-40% CisBP CAGGTCACT 50.0% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 579 aa
100-180

Region 100-180 0 PWM

Residues
81 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1HLZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 100-1801 model
Actions
Predicted = Low DIMER_Q6I9S1:100:180_1hlz_A_1 1hlz 100-180 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
102-171PF00105Double treble clef zinc finger, C4 typeoverlaps 100-180
403-577PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions