ModCRE DB

Transcription factor

Q6IB50 - HOXC6

HOXC6 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 235 aa

109 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)28
MotifPredictionSourceDNA bindingSupportLogoActions
M00392_2.00 NN 70+% CisBP TTAATTAC 99.5% identity Open · Scan
M09680_2.00 NN 70+% CisBP TTAATTA 88.1% identity Open · Scan
M00476_2.00 NN 70+% CisBP TTAATGGCC 77.1% identity Open · Scan
MA1498.1 NN 70+% JASPAR GCAATTAC 75.9% identity Open · Scan
M04959_2.00 NN 70+% CisBP GTAATTAC 74.4% identity Open · Scan
M09196_2.00 NN 70+% CisBP TTGATGGATG 74.4% identity Open · Scan
MA1495.1 NN 70+% JASPAR GTAATTAC 74.4% identity Open · Scan
M03799_2.00 NN 70+% CisBP GTAATTAC 72.9% identity Open · Scan
M06261_2.00 NN 70+% CisBP TTAATTA 72.7% identity Open · Scan
M00492_2.00 NN 70+% CisBP TAATTAGC 72.5% identity Open · Scan
M05100_2.00 NN 70+% CisBP TTAACGAC 72.5% identity Open · Scan
M05057_2.00 NN 70+% CisBP TTAATTAC 72.3% identity Open · Scan
M06248_2.00 NN 70+% CisBP TAATTGCC 72.3% identity Open · Scan
MA1501.1 NN 70+% JASPAR GGTAATTAAC 72.2% identity Open · Scan
MA0485.1 NN 70+% JASPAR GGCCATAAATCAC 71.9% identity Open · Scan
MA0485.2 NN 70+% JASPAR GTCGTAAAAT 71.9% identity Open · Scan
MA0904.1 NN 70+% JASPAR ACGGTAATTAGCTCAT 71.7% identity Open · Scan
MA0904.2 NN 70+% JASPAR GTAATTAC 71.7% identity Open · Scan
M05105_2.00 NN 70+% CisBP GTCGTAAAAT 71.1% identity Open · Scan
MA0913.1 NN 70+% JASPAR GCAATAAAAA 71.1% identity Open · Scan
MA0913.2 NN 70+% JASPAR GCAATAAAAC 71.1% identity Open · Scan
M06549_2.00 NN 70+% CisBP TTAATGA 70.3% identity Open · Scan
M00422_2.00 NN 70+% CisBP TTAATGA 70.2% identity Open · Scan
M00410_2.00 NN 70+% CisBP TTTTATGACC 70.1% identity Open · Scan
M02166_2.00 NN 70+% CisBP CTAATTAC 70.1% identity Open · Scan
MA0594.1 NN 70+% JASPAR GCCATAAATCA 70.1% identity Open · Scan
MA0594.2 NN 70+% JASPAR GTCGTAAACG 70.1% identity Open · Scan
MA1503.1 NN 70+% JASPAR GTCGTAAAAT 70.1% identity Open · Scan
Nearest Neighbor (70% - 40%)81
MotifPredictionSourceDNA bindingSupportLogoActions
MA0910.2 NN 70-40% JASPAR GCAATTAC 69.1% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 69.1% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 68.9% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 68.0% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 67.9% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 66.6% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 66.6% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 66.6% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 66.6% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 66.6% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 66.6% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 66.1% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 65.6% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 65.1% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 64.4% identity Open · Scan
M09214_2.00 NN 70-40% CisBP GCATTAATCAA 64.1% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 63.9% identity Open · Scan
MA1504.1 NN 70-40% JASPAR GTCATTAA 63.9% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 63.3% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 63.0% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 63.0% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 62.9% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 62.5% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 61.7% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 61.4% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 61.4% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 61.1% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 59.6% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 59.6% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 59.6% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 59.6% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 59.4% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 59.4% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 58.8% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 58.0% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 57.8% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 57.8% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 57.5% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 57.1% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 56.9% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 56.9% identity Open · Scan
M06224_2.00 NN 70-40% CisBP ATCATAAAA 56.3% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 56.1% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 56.1% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 54.5% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 54.5% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 54.5% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 54.3% identity Open · Scan
MA0651.1 NN 70-40% JASPAR GGTCGTAAAAT 54.2% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 54.0% identity Open · Scan
M01245_2.00 NN 70-40% CisBP TTTTATTACC 53.7% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 53.7% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 53.6% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 53.4% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 53.4% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 53.1% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 52.9% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 52.8% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 52.6% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 52.6% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 52.5% identity Open · Scan
M02062_2.00 NN 70-40% CisBP TTAATGGGCT 52.4% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 52.3% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 51.8% identity Open · Scan
M09186_2.00 NN 70-40% CisBP ACATAAAT 51.8% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 51.8% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 51.7% identity Open · Scan
M00505_2.00 NN 70-40% CisBP TTTTATGAGC 51.6% identity Open · Scan
MA0901.1 NN 70-40% JASPAR CCAATAAAAC 51.6% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 51.6% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 50.9% identity Open · Scan
M01503_2.00 NN 70-40% CisBP TTAATTAC 50.8% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 50.8% identity Open · Scan
MA0880.1 NN 70-40% JASPAR CCAATTAC 50.8% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 50.4% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 50.4% identity Open · Scan
M00496_2.00 NN 70-40% CisBP TTAAGTGGTT 50.0% identity Open · Scan
M00520_2.00 NN 70-40% CisBP CTTAAGTGCT 50.0% identity Open · Scan
M06900_2.00 NN 70-40% CisBP TCAATAATTAA 50.0% identity Open · Scan
M06912_2.00 NN 70-40% CisBP TCAATAATTGA 50.0% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 235 aa
121-199

Region 121-199 0 PWM

Residues
79 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
2R5Y
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 121-1991 model
Actions
Predicted = Low DIMER_Q6IB50:121:199_2r5y_A_1 2r5y 121-199 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
142-198PF00046Homeodomainoverlaps 121-199