ModCRE DB

Transcription factor

Q6IBK5 - GTF2F1

Transcription initiation factor IIF subunit alpha

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 517 aa

3 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE3
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q6IBK5_Q6IBK5_HUMAN:13:168_5fmf_U_1 ModCRE Homology model GGCGTTAAGAACA Region 13-168 · 1 3D model Open · Scan
TFS_tr_Q6IBK5_Q6IBK5_HUMAN:5:180_5iy6_S_1 ModCRE Homology model CCA Region 5-180 · 1 3D model Open · Scan
TFS_tr_Q6IBK5_Q6IBK5_HUMAN:6:180_5iya_S_1 ModCRE Homology model CGCA Region 6-180 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 517 aa
5-180

Region 5-180 3 PWM

Residues
176 aa
Domains
PF05793 · Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
3D models
5 active PDBs · 1 summary row
Templates
5FMF, 5IY6, 5IYA, 5IYB, 6O9L
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 1 summary row
Region 5-1805 models · 1 summary row
Actions
Predicted = Low TFS_tr_Q6IBK5_Q6IBK5_HUMAN:13:168_5fmf_U_1 5fmf 13-168 View model · PDB
Predicted = Low TFS_tr_Q6IBK5_Q6IBK5_HUMAN:5:180_5iy6_S_1 5iy6 5-180 View model · PDB
Predicted = Low TFS_tr_Q6IBK5_Q6IBK5_HUMAN:5:180_5iyb_S_1 5iyb 5-180 View model · PDB
Predicted = Low TFS_tr_Q6IBK5_Q6IBK5_HUMAN:5:180_6o9l_S_1 6o9l 5-180 View model · PDB
Predicted = Low TFS_tr_Q6IBK5_Q6IBK5_HUMAN:6:180_5iya_S_1 5iya 6-180 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6o9l 5:180 5 180 P:S · DNA:X,Y 100.0% / 100.0% 100 View · PDB TFS_tr_Q6IBK5_Q6IBK5_HUMAN:5:180_6o9l_S_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-516PF05793Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)overlaps 5-180