ModCRE DB

Transcription factor

Q6IBT9 - SOX5

SOX5 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 347 aa

35 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M11309_2.00 NN 70+% CisBP TTAACAATAC 99.7% identity Open · Scan
M09404_2.00 NN 70+% CisBP TAACAATA 97.1% identity Open · Scan
MA0087.1 NN 70+% JASPAR ATTGTTA 97.1% identity Open · Scan
M03981_2.00 NN 70+% CisBP ATTGTTCGGTGGT 81.1% identity Open · Scan
Nearest Neighbor (70% - 40%)31
MotifPredictionSourceDNA bindingSupportLogoActions
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 61.8% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 61.4% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 60.9% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 60.2% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 59.2% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 59.2% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 59.2% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 57.8% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 57.3% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 57.3% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 57.3% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 56.7% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 56.7% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 55.6% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 55.1% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 55.0% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 55.0% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 54.9% identity Open · Scan
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 54.3% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 53.0% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 52.6% identity Open · Scan
M03538_2.00 NN 70-40% CisBP AAACAATGACATTGTTT 52.2% identity Open · Scan
MA0514.1 NN 70-40% JASPAR CCTTTGTTTT 52.2% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 51.7% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 51.7% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 51.4% identity Open · Scan
MA0084.1 NN 70-40% JASPAR GTAAACAAT 51.2% identity Open · Scan
M05769_2.00 NN 70-40% CisBP CCATTGTGAG 51.1% identity Open · Scan
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 51.1% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 50.0% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 347 aa
137-218

Region 137-218 0 PWM

Residues
82 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
1J46
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 137-2181 model
Actions
Predicted = Low TFS_Q6IBT9:137:218_1j46_A_1 1j46 137-218 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
140-208PF00505HMG (high mobility group) boxoverlaps 137-218