ModCRE DB

Transcription factor

Q6IPQ7 - NR1H4

Bile acid receptor (Farnesoid X-activated receptor) (Farnesol receptor HRR-1) (Nuclear receptor subfamily 1 group H member 4) (Retinoid X receptor-interacting protein 14)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 475 aa

27 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA1110.1 NN 70+% JASPAR TCAATGACCTA 99.7% identity Open · Scan
M09275_2.00 NN 70+% CisBP GGGTCACTTCAGGTCAG 73.9% identity Open · Scan
Nearest Neighbor (70% - 40%)25
MotifPredictionSourceDNA bindingSupportLogoActions
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 65.0% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 60.2% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 60.0% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 58.8% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 58.8% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 57.7% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 57.7% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 57.5% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 57.1% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 53.6% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 53.2% identity Open · Scan
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 52.9% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 52.2% identity Open · Scan
M00814_2.00 NN 70-40% CisBP AAAGTCAAAT 52.1% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 52.1% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 52.1% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 52.1% identity Open · Scan
MA0676.1 NN 70-40% JASPAR AAAAGTCAA 52.1% identity Open · Scan
M00690_2.00 NN 70-40% CisBP AAAGATCAAA 51.5% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 51.5% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 51.3% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 51.3% identity Open · Scan
M03940_2.00 NN 70-40% CisBP TAAGTGCACGTGTACCCA 50.7% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 50.7% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 50.7% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 475 aa
123-196

Region 123-196 0 PWM

Residues
74 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1R0O
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 123-1961 model
Actions
Predicted = Low DIMER_Q6IPQ7:123:196_1r0o_B_1 1r0o 123-196 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
125-191PF00105Double treble clef zinc finger, C4 typeoverlaps 123-196
289-458PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions