Region 1474-1521 2 PWM
- Residues
- 48 aa
- Domains
- PF12851 · Oxygenase domain of the 2OGFeDO superfamily
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 1AIS, 1D3U
- Sources
- Predicted = Low
Transcription factor
Q6N021 - TET2
Methylcytosine dioxygenase TET2 (EC 1.14.11.80)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 2002 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q6N021_TET2_HUMAN:1474:1521_1ais_B_1 | ModCRE | Homology model | TTACCCCATA | Region 1474-1521 · 1 3D model | Open · Scan | |
| TFS_sp_Q6N021_TET2_HUMAN:1474:1521_1d3u_B_1 | ModCRE | Homology model | CCCCTCCCCGCA | Region 1474-1521 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
2002 aa
1474-1521
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models
2 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 1474-15212 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q6N021_TET2_HUMAN:1474:1521_1ais_B_1 | 1ais | 1474-1521 | View model · PDB |
| Predicted = Low | TFS_sp_Q6N021_TET2_HUMAN:1474:1521_1d3u_B_1 | 1d3u | 1474-1521 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 1ais | 1474:1521 | 1474 | 1521 | P:B · DNA:C,E | 25.0% / 54.2% | 24 | View · PDB TFS_sp_Q6N021_TET2_HUMAN:1474:1521_1ais_B_1 |
| 2 | 1d3u | 1474:1521 | 1474 | 1521 | P:B · DNA:C,D | 25.0% / 54.2% | 23 | View · PDB TFS_sp_Q6N021_TET2_HUMAN:1474:1521_1d3u_B_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 1290-1905 | PF12851 | Oxygenase domain of the 2OGFeDO superfamily | overlaps 1474-1521 |