ModCRE DB

Transcription factor

Q6NTE1 - ZIM3

Zinc finger, imprinted 3

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 472 aa

33 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M08312_2.00 NN 70+% CisBP ATTGGGTTTCTGTTGCTT 99.5% identity Open · Scan
Nearest Neighbor (70% - 40%)32
MotifPredictionSourceDNA bindingSupportLogoActions
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 57.4% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 56.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 54.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 54.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.1% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 53.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 53.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 52.9% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 52.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 52.2% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.1% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 51.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.9% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.6% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 50.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.4% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.4% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.1% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.1% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 50.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 472 aa
192-471

Region 192-471 0 PWM

Residues
280 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 192-4711 model
Actions
Predicted = Low TFS_Q6NTE1:192:471_5wjq_D_1 5wjq 192-471 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-48PF01352KRAB boxNo overlap with loaded model regions
195-217PF00096Zinc finger, C2H2 typeoverlaps 192-471
223-245PF00096Zinc finger, C2H2 typeoverlaps 192-471
279-301PF00096Zinc finger, C2H2 typeoverlaps 192-471
307-329PF00096Zinc finger, C2H2 typeoverlaps 192-471
335-357PF00096Zinc finger, C2H2 typeoverlaps 192-471
363-385PF00096Zinc finger, C2H2 typeoverlaps 192-471
391-413PF00096Zinc finger, C2H2 typeoverlaps 192-471
419-441PF00096Zinc finger, C2H2 typeoverlaps 192-471
449-470PF00096Zinc finger, C2H2 typeoverlaps 192-471