ModCRE DB

Transcription factor

Q6P1L6 - ZNF343

Zinc finger protein 343

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 599 aa

68 Generated PWM 7 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
MA1711.1 Known JASPAR CCGCTTCACCACGGCAC Direct PWM Open · Scan
MA1711.2 Known JASPAR CCGCTTCACCACGGCA Direct PWM Open · Scan
M04404_2.00 Known CisBP CCGCTTCACCACGGCAC Direct PWM Open · Scan
M04405_2.00 Known CisBP CCGCTTCACCGCGGCAG Direct PWM Open · Scan
M07569_2.00 Known CisBP CGCTTCCCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)58
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 62.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 62.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 59.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 58.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 58.5% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 58.3% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 57.4% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 56.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 56.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 54.9% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 54.6% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 54.6% identity Open · Scan
M00774_2.00 NN 70-40% CisBP TTAGTATACACAAGT 54.4% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 54.1% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 54.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.9% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 53.9% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 52.4% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 52.3% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 52.3% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 52.2% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 52.1% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 51.9% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 51.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 51.7% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 51.7% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 51.7% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 51.6% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.6% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 51.6% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 51.2% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 51.2% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.2% identity Open · Scan
M07666_2.00 NN 70-40% CisBP ATCTAGCCCCTGCCTACC 51.1% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.0% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 50.9% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 50.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 50.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.6% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 50.5% identity Open · Scan
M07583_2.00 NN 70-40% CisBP GAATTTATCACCACT 50.5% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 50.4% identity Open · Scan
M07662_2.00 NN 70-40% CisBP CCTGTGTCCTCCCTGGTCCCC 50.3% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.1% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 50.1% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 50.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.0% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q6P1L6_ZN343_HUMAN:296:572_5v3j_E_1 ModCRE Homology model GGCCGGGGGGGGGGCAGGGGGCTTGT Region 296-572 · 1 3D model Open · Scan
TFS_sp_Q6P1L6_ZN343_HUMAN:296:572_5v3m_C_1 ModCRE Homology model TGGGGGGGGGGGGGGCGCCCCGGGCG Region 296-572 · 1 3D model Open · Scan
TFS_sp_Q6P1L6_ZN343_HUMAN:322:599_5wjq_D_1 ModCRE Homology model CCGGGGGGGGGGGGGCCGGGCTCGTGGG Region 322-599 · 1 3D model Open · Scan
TFS_sp_Q6P1L6_ZN343_HUMAN:334:487_2i13_A_1 ModCRE Homology model AAACAGCGGCTACAGCTTCGT Region 334-487 · 1 3D model Open · Scan
TFS_sp_Q6P1L6_ZN343_HUMAN:490:599_5ei9_E_1 ModCRE Homology model ACGGAGGGGGGGGGGCC Region 490-599 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 599 aa
296-599

Region 296-599 5 PWM

Residues
304 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
7 active PDB models 6 summary rows
Region 296-5997 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q6P1L6_ZN343_HUMAN:351:402_1llm_D_1 1llm 351-402 View model · PDB
Predicted = Low TFS_sp_Q6P1L6_ZN343_HUMAN:296:572_5v3j_E_1 5v3j 296-572 View model · PDB
Predicted = Low TFS_sp_Q6P1L6_ZN343_HUMAN:296:572_5v3m_C_1 5v3m 296-572 View model · PDB
Predicted = Low TFS_sp_Q6P1L6_ZN343_HUMAN:297:595_7w1m_H_1 7w1m 297-595 View model · PDB
Predicted = Low TFS_sp_Q6P1L6_ZN343_HUMAN:322:599_5wjq_D_1 5wjq 322-599 View model · PDB
Predicted = Low TFS_sp_Q6P1L6_ZN343_HUMAN:334:487_2i13_A_1 2i13 334-487 View model · PDB
Predicted = Low TFS_sp_Q6P1L6_ZN343_HUMAN:490:599_5ei9_E_1 5ei9 490-599 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 265:599 334 487 P:A · DNA:C,D 58.4% / 68.2% 100 View · PDB TFS_sp_Q6P1L6_ZN343_HUMAN:334:487_2i13_A_1
1 5wjq 265:599 322 599 P:D · DNA:A,B 47.5% / 66.2% 98 View · PDB TFS_sp_Q6P1L6_ZN343_HUMAN:322:599_5wjq_D_1
2 5v3m 265:599 296 572 P:C · DNA:A,B 47.3% / 65.3% 100 View · PDB TFS_sp_Q6P1L6_ZN343_HUMAN:296:572_5v3m_C_1
3 5v3j 265:599 296 572 P:E · DNA:A,B 47.3% / 65.3% 100 View · PDB TFS_sp_Q6P1L6_ZN343_HUMAN:296:572_5v3j_E_1
1 1llm 265:599 351,351 402,402 P:C,D · DNA:A,B 42.3% / 53.8% 59,61 View · PDB DIMER_sp_Q6P1L6_ZN343_HUMAN:351:402_1llm_D_1
5 7w1m 265:599 297 595 P:H · DNA:F,G 34.7% / 54.2% 92 View · PDB TFS_sp_Q6P1L6_ZN343_HUMAN:297:595_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
61-101PF01352KRAB boxNo overlap with loaded model regions
108-129PF21225C2H2-type zinc fingerNo overlap with loaded model regions
269-291PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
297-319PF00096Zinc finger, C2H2 typeoverlaps 296-599
353-375PF00096Zinc finger, C2H2 typeoverlaps 296-599
381-403PF00096Zinc finger, C2H2 typeoverlaps 296-599
409-431PF00096Zinc finger, C2H2 typeoverlaps 296-599
437-459PF00096Zinc finger, C2H2 typeoverlaps 296-599
465-487PF00096Zinc finger, C2H2 typeoverlaps 296-599
493-515PF00096Zinc finger, C2H2 typeoverlaps 296-599
521-543PF00096Zinc finger, C2H2 typeoverlaps 296-599
549-571PF00096Zinc finger, C2H2 typeoverlaps 296-599
577-599PF00096Zinc finger, C2H2 typeoverlaps 296-599