ModCRE DB

Transcription factor

Q6P9A3 - ZNF549

Zinc finger protein 549

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 640 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
M08300_2.00 Known CisBP CTGCCCAATTCAT Direct PWM Open · Scan
MA1728.1 Known JASPAR GCTGCTGCCCAG Direct PWM Open · Scan
MA1728.2 Known JASPAR TGCTGCCC Direct PWM Open · Scan
M07576_2.00 Known CisBP TGCTGCCCAATTCAT Direct PWM Open · Scan
M08883_2.00 Known CisBP GTGCTGCCCAATTCATGAAT Direct PWM Open · Scan
ZN549_HUMAN.H11MO.0.C Known HOCOMOCO ATTCATGAATTGGGCAGCAC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 640 aa
319-467

Region 319-467 0 PWM

Residues
149 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
2I13
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 319-4671 model
Actions
Predicted = Low TFS_Q6P9A3:319:467_2i13_A_1 2i13 319-467 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
27-67PF01352KRAB boxNo overlap with loaded model regions
275-298PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
304-326PF00096Zinc finger, C2H2 typeoverlaps 319-467
332-355PF00096Zinc finger, C2H2 typeoverlaps 319-467
361-383PF00096Zinc finger, C2H2 typeoverlaps 319-467
389-411PF00096Zinc finger, C2H2 typeoverlaps 319-467
417-439PF00096Zinc finger, C2H2 typeoverlaps 319-467
445-467PF00096Zinc finger, C2H2 typeoverlaps 319-467
473-495PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
501-523PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
530-551PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
558-579PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
585-607PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
613-635PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions