ModCRE DB

Transcription factor

Q6PCT2 - FBXL19

F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat protein 19)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 694 aa

7 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M01908_2.00 NN 70-40% CisBP TTTGCGG 69.7% identity Open · Scan
M01913_2.00 NN 70-40% CisBP GGCAGCGGGG 53.4% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q6PCT2_FXL19_HUMAN:34:77_3qmb_A_1 ModCRE Homology model CCCCACGGGGTC Region 34-77 · 1 3D model Open · Scan
TFS_sp_Q6PCT2_FXL19_HUMAN:35:151_6asb_C_1 ModCRE Homology model CCGCGCGCGGGT Region 35-151 · 1 3D model Open · Scan
TFS_sp_Q6PCT2_FXL19_HUMAN:39:77_3qmc_A_1 ModCRE Homology model ACCAACGGGTTC Region 39-77 · 1 3D model Open · Scan
TFS_sp_Q6PCT2_FXL19_HUMAN:39:77_3qmd_A_1 ModCRE Homology model ACCCGCGGGTTT Region 39-77 · 1 3D model Open · Scan
TFS_sp_Q6PCT2_FXL19_HUMAN:39:77_3qmh_A_1 ModCRE Homology model AAACCCGCGGGG Region 39-77 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 694 aa
34-151

Region 34-151 5 PWM

Residues
118 aa
Domains
PF02008 · CXXC zinc finger domain PF16866 · PHD-finger
3D models
5 active PDBs · 5 summary rows
Templates
3QMB, 3QMC, 3QMD, 3QMH, 6ASB
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 34-1515 models · 5 summary rows
Actions
Predicted = Low TFS_sp_Q6PCT2_FXL19_HUMAN:34:77_3qmb_A_1 3qmb 34-77 View model · PDB
Predicted = Low TFS_sp_Q6PCT2_FXL19_HUMAN:35:151_6asb_C_1 6asb 35-151 View model · PDB
Predicted = Low TFS_sp_Q6PCT2_FXL19_HUMAN:39:77_3qmc_A_1 3qmc 39-77 View model · PDB
Predicted = Low TFS_sp_Q6PCT2_FXL19_HUMAN:39:77_3qmd_A_1 3qmd 39-77 View model · PDB
Predicted = Low TFS_sp_Q6PCT2_FXL19_HUMAN:39:77_3qmh_A_1 3qmh 39-77 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6asb 34:151 35 151 P:C · DNA:A,B 100.0% / 100.0% 100 View · PDB TFS_sp_Q6PCT2_FXL19_HUMAN:35:151_6asb_C_1
2 3qmh 34:151 39 77 P:A · DNA:B,C 67.5% / 75.0% 73 View · PDB TFS_sp_Q6PCT2_FXL19_HUMAN:39:77_3qmh_A_1
3 3qmd 34:151 39 77 P:A · DNA:B,C 67.5% / 75.0% 73 View · PDB TFS_sp_Q6PCT2_FXL19_HUMAN:39:77_3qmd_A_1
4 3qmc 34:151 39 77 P:A · DNA:B,C 67.5% / 75.0% 73 View · PDB TFS_sp_Q6PCT2_FXL19_HUMAN:39:77_3qmc_A_1
5 3qmb 34:151 34 77 P:A · DNA:B,C 62.2% / 68.9% 81 View · PDB TFS_sp_Q6PCT2_FXL19_HUMAN:34:77_3qmb_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
33-77PF02008CXXC zinc finger domainoverlaps 34-151
82-149PF16866PHD-fingeroverlaps 34-151
424-466PF12937F-box-likeNo overlap with loaded model regions